Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1056 ATGGCGTCACTCTGCAGAATCCCTAGACGCCTCCTCTCTCTCGCCCGTTTCTCCACCCTCTCTGACCCATTTACCACCTTCCTTGCCGCCAAATCCGCCGTAGAGTCCGAGCCCGACCCAGAAAAGCTCGCCCACATCTTCCACCACCAATCCTCCAACTTCGCCCGCTTCCGCCGCCACCGCCCCCTCTACCAACTCTCCTGCCGCCGCCTCTCCAGGTCTGGCCGCCTCGACCTCGTCGAGCGCCTCATCGACCACCAGAAAACCCTACCCCACCCCCGTACCGAAGGCTTCTGGATACGCCTCATCATGCTCTACTCCACCTCCGGCATGGTCGACCACGCCCTCCGTACATTTCACCAAATGGTTCAAGATCGTGTCCAATTGACCGAGAAATCGCTCTGTGCGATTCTCACAGTTTATTTAGACAATGATTTGATTGACCAATTGCATACGGTTTTCAACACCATGCCCTCGGAGATTGGTGTTTCTCCAGGAACGAAGTCGTATAGTTTGGTTCTGAAGGCATTTTGCCAACAGAAGGATATGGAATCCGCTCGAAAGTTGCTTCATAAGATGGAAAATCCGGATATTGGATCGTATAATGTGCTGCTAGAGGCTTATTCGGAGAATGGAGATGGGGTTGAATTCGATGAGATTCTGAAGGAGATTAAGAATAAAGGTTTGGAGCATGACTGCACCACTTACAATCATAGGATTTTGAGGTTTTGCAAGAATAAGGAGTCTGTTCGGGCCAAAAAGCTGTTGGATGAGATGGTAGCCAAGGGAGTGAAGCCGAATTCGGCTAGTTATAATATGATTATTCATGGGTTTTGCAAGGTGGGGGATTTTGAATCAGCGCAGAAGGTTTTGGGGAGAATGTTGGCGGATGGATATGTTGCTCCCTGTTCGATTTCTTATATTACTTTGTTTCAGCATATGGTTAAGGAGGGAGAGTTTGATTCAGCATTGAATATGTGCAAGGAGATTATAAGGAGGAAATGGGTTCCTCCATTTGAGGCCATGGATGGTCTGGTTAAGGGGTTGGTGGAAATTTCGAAAGTGGAGGCTGCAAAAGAAGTCGTTGAGAAGATGAAGAAGAGGCTTAAAGGGAATGCTGCGGATTCTTGGAAAACGCATGAAGCTGCACTGCCTTTGTAG 1161 48.92 MASLCRIPRRLLSLARFSTLSDPFTTFLAAKSAVESEPDPEKLAHIFHHQSSNFARFRRHRPLYQLSCRRLSRSGRLDLVERLIDHQKTLPHPRTEGFWIRLIMLYSTSGMVDHALRTFHQMVQDRVQLTEKSLCAILTVYLDNDLIDQLHTVFNTMPSEIGVSPGTKSYSLVLKAFCQQKDMESARKLLHKMENPDIGSYNVLLEAYSENGDGVEFDEILKEIKNKGLEHDCTTYNHRILRFCKNKESVRAKKLLDEMVAKGVKPNSASYNMIIHGFCKVGDFESAQKVLGRMLADGYVAPCSISYITLFQHMVKEGEFDSALNMCKEIIRRKWVPPFEAMDGLVKGLVEISKVEAAKEVVEKMKKRLKGNAADSWKTHEAALPL* 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17594006 17595167 + Vvi1g1056 Vvi1g1056 770256

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1056 386 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Vvi1g1056 386 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Vvi1g1056 386 Pfam Pentacotripeptide-repeat region of PRORP 111 226 IPR033443 -
Vvi1g1056 386 Pfam PPR repeat family 234 280 IPR002885 -
Vvi1g1056 386 PANTHER REPEAT 336, PUTATIVE-RELATED 15 384 - -
Vvi1g1056 386 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 15 384 - -
Vvi1g1056 386 Gene3D Tetratricopeptide repeat domain 67 244 IPR011990 GO:0005515
Vvi1g1056 386 Coils Coil 352 372 - -
Vvi1g1056 386 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Vvi1g1056 386 Gene3D Tetratricopeptide repeat domain 245 384 IPR011990 GO:0005515
Vvi1g1056 386 Pfam PPR repeat 306 333 IPR002885 -
Vvi1g1056 386 TIGRFAM PPR: pentatricopeptide repeat domain 305 337 IPR002885 -
Vvi1g1056 386 TIGRFAM PPR: pentatricopeptide repeat domain 169 194 IPR002885 -
Vvi1g1056 386 TIGRFAM PPR: pentatricopeptide repeat domain 270 300 IPR002885 -
Vvi1g1056 386 TIGRFAM PPR: pentatricopeptide repeat domain 200 233 IPR002885 -
Vvi1g1056 386 TIGRFAM PPR: pentatricopeptide repeat domain 235 268 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1056 - - - vvi:100244449 750.355
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1056 . . . . . . . . . Cmo18g00280 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012300 1 1 0 0 0 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 28