Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1058 ATGTACTTGTTAATAAGTGGTATTAAATTGGTATGTACTTTGTCCTTTACTTTTGAGGGTAATTCAGAATCCGCAACACACCGACACACAAAAGAGAGAACAATGGCGGCTAATTTCATCAGGCTCGACGATTCCCCAATGTTCATGAAGCAGGTATATTCTCTTGAACAAACATCGGAGGACTTGAAAGATCGCTGCCAGATACTGTACAAAGGATGTAAAAAATTTATGACAGCTATTGGAGAGGCTTATAATGGAGACATCTCTTTTGCAGATTCTTTAGAAGCATTTGGTGGTGGACAAGATGATCCTATTAGTGTGTCTATAGGAGGTCCCGTCCTATCCAAGTTCATTACTGCATTTCGTGAGCTTGCTACATATAAGGAGCTTCTTCGTTCCCAAGTGGAGCATGTATTGCTTGATCGGCTGATGCACTTTATAACTGTTGATCTGCATGATGCTAAGGAGTCTCGTAAGCGATTTGACAAAGCTATACATGCTTATGATCAGTCACGTGAGAAGTTTGTGTCTTTGAAGAAGGGTACACGCGAAGACATTGTGGCTGAACTAGAAGAGGATCTACAGAACTCAAAGTCATCATTTGAGAGAAGCCGCTTTAATTTAGTAAATTCCCTTGTGAAAATTGAAGCAAAAAAGAAATATGAATTTTTGGAATCTTTTAGTGCTATTATGGATGCTCATCTGAGATATTTTAAGCTGGGATATGACTTGTTGAGTCAGCTGGAGCCATTTATTCACCAGGTATTGACATATGCACAACAATCGAAAGAACTAGCCAACATTGAACAAGATAAACTTGCAAAAAGAATTCAAGCATTCAGGACACAAACAGAGTTGGAGAGTCTAAAAGCTTCCACTAACATGGAGGCCTCAAGACATGCTAGTGGCATTCATGCTGTTGGTATGAGTTCTTACAAAAACATAGAAGCAATTATGCAATCCACTACAAAAGGGGAGGTGCAAACGATAAAGCAAGGCTATCTCTTAAAACGTTCTTCAAGTTTGAGAGGAGATTGGAAAAGGAGGTTCTTTGTACTTGACAGCCAGGGGACTTTATATTATTATAGAAATAAGGGTACGAAATCCATGGGATCTCAACCAAACTATTCAGCTGGTTCAATGGAACATAATAGCAGCATGTTCAGTAGATTCCGCTCAAAGCACAATAAAGCATCATTACTCAATGAAGAAAACTTGGGTTGTCATACTGTTGATCTCCGTACTTCAACAATAAAGATTGATGCAGAAGATTCAGATCTGCGGCTTTGCTTCAGAATAATATCTCCAGCAAAAACTTATACATTGCAGGCTGAAAATGGAGCAGACAGAATGGACTGGATAAACAAAATAACAGGGGTTATTGCATCCCTTTTAAATTCTCACATTCTGCAACAGCCGCACCCTGGAACAAAGCTTCTAGACAATAATGACTCTGCCATTAGTGCTTATGACGTTCGATCATTAAATGGTCTTCCTGAGGATGATCTGAAAGTCAATCAAGCTGATAATGTTTCTAAAGTTCTCAGAGAAATTCCTGGAAATGATCTGTGTGCAGAATGCAGTGCTCCTGAACCTGATTGGGCATCTTTAAATCTTGGCATTTTGTTGTGCATTGAGTGCTCTGGTGTTCATCGGAATCTTGGTGTTCATGTTTCAAAGGTAAGATCTATCACATTAGATGTCAAGGTTTGGGAACCTCCCATCTTGGATCTGTTTCGCACTCTTGGAAATACGTATTGTAACTCTATCTGGGAGGAACTACTACTACTTCAGAAGGAAAGATTAGGTGAATCAAATGTTTTCTCCTCAACAGTTATGAAGCCATGCCCCAAAGATGCAATTCACCAAAAGGAAAAATATATTCAAGCAAAGTATGTAGAGAAACATCTTGTCAGCAAAGAAGCAACTGTAGCTGACATTCCTTCTGCCAATAGCATCTGGGAGGCTGTTAAGAGTAATAATTTGAGAGAAGTATATCGCCTTATAGTGAAATCAGATGTGAGTATCATCAACACCACCTATGATGAGTTGGTTGGTGTTAATTTACATCACACCATTGATGCACAAGAGTCAGAGGTTGGTTGTCACTCAGTAGAAAGGAAGCAGTATGATCCAAGTGTCTGTCAGAGGATTAAGGATTCCAGCTCTCCAGCTAATTGTCTTCAAGGTTGTTCATTATTGCATCTAGCATGTCATTTGGGCAATCAAGTGATGGTGGAGCTGTTGTTGCAATTTGGTGCTGACATAAACATGCGAGACTTTCATGGAAGGACTCCTCTGCACCATTGCATTTCCAGAGGGAACAATAAATTGGCAAAGTTTCTACTTAGAAGAGGTGTCCGTCCTTCAATCAAAGATGGTGGAGATCTAAGTGCATTGGAAAGAGCAATGGAGTTGGGAGCCATAACTGACGAGGAGCTATTTATTTTGCTTGCCGAAGGCCAATGA 2469 39.85 MYLLISGIKLVCTLSFTFEGNSESATHRHTKERTMAANFIRLDDSPMFMKQVYSLEQTSEDLKDRCQILYKGCKKFMTAIGEAYNGDISFADSLEAFGGGQDDPISVSIGGPVLSKFITAFRELATYKELLRSQVEHVLLDRLMHFITVDLHDAKESRKRFDKAIHAYDQSREKFVSLKKGTREDIVAELEEDLQNSKSSFERSRFNLVNSLVKIEAKKKYEFLESFSAIMDAHLRYFKLGYDLLSQLEPFIHQVLTYAQQSKELANIEQDKLAKRIQAFRTQTELESLKASTNMEASRHASGIHAVGMSSYKNIEAIMQSTTKGEVQTIKQGYLLKRSSSLRGDWKRRFFVLDSQGTLYYYRNKGTKSMGSQPNYSAGSMEHNSSMFSRFRSKHNKASLLNEENLGCHTVDLRTSTIKIDAEDSDLRLCFRIISPAKTYTLQAENGADRMDWINKITGVIASLLNSHILQQPHPGTKLLDNNDSAISAYDVRSLNGLPEDDLKVNQADNVSKVLREIPGNDLCAECSAPEPDWASLNLGILLCIECSGVHRNLGVHVSKVRSITLDVKVWEPPILDLFRTLGNTYCNSIWEELLLLQKERLGESNVFSSTVMKPCPKDAIHQKEKYIQAKYVEKHLVSKEATVADIPSANSIWEAVKSNNLREVYRLIVKSDVSIINTTYDELVGVNLHHTIDAQESEVGCHSVERKQYDPSVCQRIKDSSSPANCLQGCSLLHLACHLGNQVMVELLLQFGADINMRDFHGRTPLHHCISRGNNKLAKFLLRRGVRPSIKDGGDLSALERAMELGAITDEELFILLAEGQ* 823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17604977 17705405 - Vvi1g1058 Vvi1g1058 770258

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1058 822 Gene3D - 646 810 IPR036770 -
Vvi1g1058 822 PANTHER CENTAURIN/ARF 37 818 IPR045258 GO:0005096
Vvi1g1058 822 CDD PH_ACAP 331 466 - -
Vvi1g1058 822 SUPERFAMILY Ankyrin repeat 652 808 IPR036770 -
Vvi1g1058 822 ProSiteProfiles Ankyrin repeat profile. 762 794 IPR002110 GO:0005515
Vvi1g1058 822 Pfam Ankyrin repeats (3 copies) 713 793 IPR002110 GO:0005515
Vvi1g1058 822 SMART 5bar 34 254 IPR004148 GO:0005515|GO:0005737
Vvi1g1058 822 Pfam PH domain 330 461 IPR001849 -
Vvi1g1058 822 ProSiteProfiles ARF GTPase-activating proteins domain profile. 509 645 IPR001164 GO:0005096
Vvi1g1058 822 Pfam BAR domain of APPL family 42 264 - -
Vvi1g1058 822 SMART arf_gap_3 509 645 IPR001164 GO:0005096
Vvi1g1058 822 SMART PH_update 329 464 IPR001849 -
Vvi1g1058 822 CDD BAR_SFC_plant 50 251 IPR035670 -
Vvi1g1058 822 Gene3D Arfaptin homology (AH) domain/BAR domain 41 287 IPR027267 -
Vvi1g1058 822 SUPERFAMILY BAR/IMD domain-like 42 351 IPR027267 -
Vvi1g1058 822 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD2 37 818 - -
Vvi1g1058 822 Gene3D - 320 473 IPR011993 -
Vvi1g1058 822 ProSiteProfiles PH domain profile. 328 462 IPR001849 -
Vvi1g1058 822 ProSiteProfiles Ankyrin repeat region circular profile. 762 793 - -
Vvi1g1058 822 Pfam Putative GTPase activating protein for Arf 511 640 IPR001164 GO:0005096
Vvi1g1058 822 SUPERFAMILY PH domain-like 329 473 - -
Vvi1g1058 822 Gene3D Arf GTPase activating protein 498 645 IPR038508 -
Vvi1g1058 822 PRINTS HIV Rev interacting protein signature 521 540 IPR001164 GO:0005096
Vvi1g1058 822 PRINTS HIV Rev interacting protein signature 540 557 IPR001164 GO:0005096
Vvi1g1058 822 PRINTS HIV Rev interacting protein signature 563 584 IPR001164 GO:0005096
Vvi1g1058 822 ProSiteProfiles Ankyrin repeat profile. 729 761 IPR002110 GO:0005515
Vvi1g1058 822 ProSiteProfiles Ankyrin repeat region circular profile. 729 760 - -
Vvi1g1058 822 CDD ArfGap 513 632 - -
Vvi1g1058 822 SUPERFAMILY ArfGap/RecO-like zinc finger 510 638 IPR037278 -
Vvi1g1058 822 SMART ANK_2a 762 791 IPR002110 GO:0005515
Vvi1g1058 822 SMART ANK_2a 729 758 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1058 K12489 ACAP; Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein - vvi:100261572 1565.82
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1058 . . . . . . . . Cmo04g01063 . . . Car04g00926 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01197 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003009 1 11 0 0 1 2 2 2 3 0 1 1 2 1 1 2 2 2 3 3 1 1 1 2 2 1 0 2 0 1 51