Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g106 ATGAAAGCTTTGAGGGGTTTAAGAGCCCTCACAACCCTCTCTTCCAAAACCCAGAAACCCCACCTCACTTCCAATCTTCTCTATCGCTTCTACGCCGCCCAACCTCAGCAACAAGACCACTCCACAACCACCAACTCCCTCGAAGACCACGAAGACGATGACGCCGTTTTCGACAGTTCCCAATTCGCATTACCCAACATGGGTACGTCCCCGGTCCCCGATCAACCCACTTGGGACCGGGAGTACAGGGCTAAGGCTGACCGTACCATCTTCGGCGAGGAGACCCAGAAGCAGAAGTCCGAAGAAGACGAGAGGAAACGCCGGGCCATTGTGCTTGCGAAGGCTCTGCTTGAAGCGGCTTTGCAGAAGCCCGACGAAGAGGACGATATGCCGGTGAAGGAAGAGGACCAGAGGTCGTTGTCGGTCGGAATTATTGGAGCTCCCAATGCCGGAAAATCTTCACTGACCAATCACGTGGTTGGGACAAAGGTTGCTGCTGTTTCACGGAAGACAAACACTACTACTCATGAAGTGTTAGGAGTAATGACCAAGGGGAACACCCAAATTTGTTTCTTTGATACCCCAGGACTTATGTTAAAGAGCAGTGGATACCCTTATAGTGATATGAGGGCTCGTGTGGAAAGTGCTTGGAGTTCAGTTGGTCTCTATGATGTACTCATAGTAATCTTTGATGTTCATCGGCATCTTAGCAGGCCTGATTCAAGGGTGGTAAGATTGATTGAAAGAATGGGAGCACAAGCACACCCAAAACAGAAGCGGGTGTTGTGTATGAATAAGGTTGATTTGGTTGAAAAGAAGAAAGATTTGTTGAAGGTTGCTGATGAATTCAAAGATCTTCCTGGGTATGAAAGGTATTTCATGATCTCAGGATTAAAGGGTTCTGGAGTAAAAGACCTTACTCAATTTTTGATGGAGCAGGCATTTAAAAGGCCTTGGGATGAAGATCCATTCACCATGAGTGAAGAAGTTATGAAGAATATATCATTAGAAGTTGTCAGAGAAAGGTTGTTAGATCACGTGCATCAGGAAATTCCATATGGTATAGACCATCGCTTGATAGACTGGAAGGAGTTAAGAGATGGTTCTCTTAGGATTGAACAACATTTGATCACTCCCAAACAGAGCCAGCGCAAGATTCTTGTGGGAAAGAAAGGCTCTAAAATAGGGAGAATTGGCATTGAAGCTAATGAAGAGCTTCGGTCCATTTTCAAGAGGGATGTGCATCTCATCCTCCAGGTCAGAGTTAAATGA 1272 46.23 MKALRGLRALTTLSSKTQKPHLTSNLLYRFYAAQPQQQDHSTTTNSLEDHEDDDAVFDSSQFALPNMGTSPVPDQPTWDREYRAKADRTIFGEETQKQKSEEDERKRRAIVLAKALLEAALQKPDEEDDMPVKEEDQRSLSVGIIGAPNAGKSSLTNHVVGTKVAAVSRKTNTTTHEVLGVMTKGNTQICFFDTPGLMLKSSGYPYSDMRARVESAWSSVGLYDVLIVIFDVHRHLSRPDSRVVRLIERMGAQAHPKQKRVLCMNKVDLVEKKKDLLKVADEFKDLPGYERYFMISGLKGSGVKDLTQFLMEQAFKRPWDEDPFTMSEEVMKNISLEVVRERLLDHVHQEIPYGIDHRLIDWKELRDGSLRIEQHLITPKQSQRKILVGKKGSKIGRIGIEANEELRSIFKRDVHLILQVRVK* 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1063041 1070438 - Vvi1g106 Vvi1g106 769306

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g106 423 PANTHER GTPASE ERA 33 423 IPR005662 GO:0003723|GO:0005525
Vvi1g106 423 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 327 423 IPR009019 GO:0003723
Vvi1g106 423 Gene3D - 327 423 IPR015946 -
Vvi1g106 423 TIGRFAM era: GTP-binding protein Era 141 421 IPR005662 GO:0003723|GO:0005525
Vvi1g106 423 PANTHER GTPASE ERA, MITOCHONDRIAL 33 423 - -
Vvi1g106 423 ProSiteProfiles Era-type guanine nucleotide-binding (G) domain profile. 138 318 IPR030388 GO:0005525
Vvi1g106 423 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 323 IPR027417 -
Vvi1g106 423 Hamap GTPase Era [era]. 137 423 IPR005662 GO:0003723|GO:0005525
Vvi1g106 423 Pfam KH domain 350 423 IPR004044 GO:0003723
Vvi1g106 423 Pfam 50S ribosome-binding GTPase 142 266 IPR006073 GO:0005525
Vvi1g106 423 ProSiteProfiles Type-2 KH domain profile. 347 423 IPR004044 GO:0003723
Vvi1g106 423 TIGRFAM small_GTP: small GTP-binding protein domain 141 310 IPR005225 GO:0005525
Vvi1g106 423 CDD Era 137 314 IPR030388 GO:0005525
Vvi1g106 423 Gene3D - 134 322 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g106 K03595 era, ERAL1; GTPase - vvi:100244086 813.527
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g106 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012209 1 1 0 2 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29