Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1063 ATGGCTACTGTAAGGAAAAGTAAGGGCCGCCAGAGGATTGAGATCGCTAAAATAAAGAATGAGAGTAACTTACAGGTTACTTTCTCCAAACGTCGGGCTGGCCTTTTTAAGAAGGCTAGCGAGTTGTGCACTCTTTGCGGTGCTGAAACAGCCATCATAATCTTCTCGCCAGGGAAAAAGATATATTCATTTGGTCACCCTTGTATTGAATCAATCATTGATAGGTTCCTGGCGCGAAACCCTTTTCTAAATGCTGGTGCACTGCAGCTCTTCCAGGCTCACCTTGAGGCTGAGAAGAAACGTGGTGAAGCACTTGACAAGACGACGAAAGCTTTCCAGAGACAGTGCTGGTGGGCAGCTCCAGTTGAGGAGCTTAACTTGGAGCAGCTTCAGATGCTAAAGGTGTCATTGGAGATGCTGAGGAAGAAAGTTGAAAGGCAAGCTGATAAGCTTATCATTGAGGCATCAGAACCCCCTGCTTTTTCTGCTCCATATTCAGTTGGAGCAATCCCTCCATATGAACCACAGACGGCTGGATTTGATCCTCAAGGCTCTACCTTTGGTTTTGATGGTCATTTCTTTTGA 585 45.98 MATVRKSKGRQRIEIAKIKNESNLQVTFSKRRAGLFKKASELCTLCGAETAIIIFSPGKKIYSFGHPCIESIIDRFLARNPFLNAGALQLFQAHLEAEKKRGEALDKTTKAFQRQCWWAAPVEELNLEQLQMLKVSLEMLRKKVERQADKLIIEASEPPAFSAPYSVGAIPPYEPQTAGFDPQGSTFGFDGHFF* 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17826901 17827540 - Vvi1g1063 Vvi1g1063 770263

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1063 194 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Vvi1g1063 194 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Vvi1g1063 194 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Vvi1g1063 194 Coils Coil 127 154 - -
Vvi1g1063 194 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Vvi1g1063 194 Gene3D - 20 85 IPR036879 GO:0003677|GO:0046983
Vvi1g1063 194 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 93 159 - -
Vvi1g1063 194 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 94 - -
Vvi1g1063 194 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Vvi1g1063 194 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Vvi1g1063 194 Gene3D - 86 158 - -
Vvi1g1063 194 SUPERFAMILY SRF-like 9 80 IPR036879 GO:0003677|GO:0046983
Vvi1g1063 194 PANTHER MADS BOX PROTEIN 93 159 - -
Vvi1g1063 194 PANTHER MADS BOX PROTEIN 7 94 - -
Vvi1g1063 194 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1063 - - - vvi:100242809 378.252
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1063 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003994 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 2 2 1 7 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14458 PF00319 SRF-TF 1.20E-24 No_clan Vvi TF