Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1065 ATGGCACCCATCTTGTGTACTCCAACAAGCCAGTTATCTTCGGAATCAAATGCAGCACAGACCCTTCATCTGCTTCAAAGATGTTCAAATATGGAGGAACTAAGGCAGATCCATGGCCAGATGTTGAAAACAGGCCTTATTCTTGATGAAATCCCAGCCAGCAAGCTCCTAGCTTTCTGTGCTTCACCGAATTCCGGGAGTTTAGCCTACGCCCGGACAGTTTTTGACAGGATATTCAGACCCAATACTTTCATGTGGAATACCATGATAAGAGGATACTCAAACAGCAAAGAACCTGAAGAAGCCCTACTTCTTTACCATCACATGCTGTATCATTCTGTTCCACACAATGCTTACACCTTCCCTTTCCTGCTGAAAGCCTGTTCCAGTATGTCAGCCTTGGAAGAAACTCAACAAATCCATGCTCACATCATTAAAATGGGCTTTGGCTCAGAGATATACACCACAAATTCCCTGCTGAATGTTTACTCCAAATCTGGTGACATTAAATCTGCCCGTCTCCTTTTTGACCAGGTAGACCAACGAGACACTGAAGCTTTGAATCTATTTCACAGAATGCAGACTGCAGGTATAAAACTTGACAATGTAGCACTGGTAAGCACGCTTCAAGCATGTGCGGATCTTGGAGTGTTGGATCAAGGCAAATGGATTCATGCCTACATTAAAAAGCATGAAATTGAAATTGACCCAATCCTGGGTTGTGTTCTCATAGACATGTATGCTAAGTGTGGCGACTTGGAAGAAGCCATAGAAGTTTTTAGAAAAATGGAGGAAAAAGGTGTCTCTGTATGGACAGCCATGATTTCTGGTTATGCAATTCATGGACGTGGAAGAGAAGCTCTTGAATGGTTTATGAAAATGCAGACTGCAGGAGTGGAACCAAACCAGATGACTTTCACAGGGATTTTGACTGCTTGTAGCCATGCAGGACTAGTACATGAGGCAAAATTGTTGTTTGAGAGCATGGAGAGAATTCATGGCTTCAAACCTTCGATAGAGCATTATGGGTGTATGGTTGACCTCCTGGGCCGAGCTGGGTTGTTGAAGGAAGCAGAAGAGTTAATTGAGAATATGCCTGTAAAACCAAATGCTGCCATTTGGGGGGCACTGCTCAATGCATGTCATATTCATGGAAATCTTGAGCTAGGTAAACAGATAGGGAAAATTTTGATTCAAGTGGATCCTGGCCATGGTGGCCGATACATTCACTTGGCAAGCATTCATGCAGCTGCAGGGGAATGGAACCAAGCAGCTAGAGTGAGACGACAGATGAAAGAGCAGGGAGTTTCAAAACTTCCAGGGTGCAGTGTGATCAGTGTGAATGGGACAGCTCATGAATTTTTAGCCGGGGATGAATCGCACCCGCAGATCAAAGAGATAGATCACATGTTGGAGCAGATTGTGGAGAGACTAAGAGAAGAAGGATATAAACCTAAACTAGGGGATTTGCTACTGGATCTAGAGGACAAGGAAAAAGAAACAGCAATTCATCATCATAGTGAGAAGCTTGCAGTCACATTTGGGCTCATCAGCACTAAACCAGGGATGACAATTCGGATAGTTAAGAATCTTCGAGTTTGTGAGGACTGTCACACAGTAATAAAGCTCATCTCCAAGGTCTATGCAAGGGAAATTCTCATGCGGGATAGAACACGGTTCCACCTTTTCAAAGACGGAAATTGTACTTGTGGGGACTACTGGTGA 1725 43.83 MAPILCTPTSQLSSESNAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW* 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17879904 17881773 + Vvi1g1065 Vvi1g1065 770265

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1065 574 Pfam E motif 384 445 IPR046848 -
Vvi1g1065 574 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Vvi1g1065 574 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 82 116 IPR002885 -
Vvi1g1065 574 SUPERFAMILY TPR-like 246 426 IPR011990 GO:0005515
Vvi1g1065 574 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 152 186 IPR002885 -
Vvi1g1065 574 Pfam E+ motif 452 478 IPR046849 -
Vvi1g1065 574 Pfam DYW family of nucleic acid deaminases 482 574 IPR032867 GO:0008270
Vvi1g1065 574 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 301 IPR002885 -
Vvi1g1065 574 Pfam PPR repeat family 81 129 IPR002885 -
Vvi1g1065 574 Pfam PPR repeat family 267 314 IPR002885 -
Vvi1g1065 574 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 184 548 - -
Vvi1g1065 574 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 18 184 - -
Vvi1g1065 574 TIGRFAM PPR: pentatricopeptide repeat domain 270 302 IPR002885 -
Vvi1g1065 574 TIGRFAM PPR: pentatricopeptide repeat domain 85 110 IPR002885 -
Vvi1g1065 574 TIGRFAM PPR: pentatricopeptide repeat domain 242 269 IPR002885 -
Vvi1g1065 574 TIGRFAM PPR: pentatricopeptide repeat domain 305 338 IPR002885 -
Vvi1g1065 574 Pfam PPR repeat 341 366 IPR002885 -
Vvi1g1065 574 Pfam PPR repeat 155 179 IPR002885 -
Vvi1g1065 574 Gene3D Tetratricopeptide repeat domain 183 330 IPR011990 GO:0005515
Vvi1g1065 574 Gene3D Tetratricopeptide repeat domain 13 182 IPR011990 GO:0005515
Vvi1g1065 574 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 184 548 - -
Vvi1g1065 574 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 18 184 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1065 - - - vvi:100266692 1100.12
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1065 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000117 7 10 4 7 7 7 7 7 6 8 6 5 7 4 3 8 6 7 7 7 7 7 6 6 2 5 4 4 5 11 187