Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g107 ATGGGGAAGAAGAAGAAGAGAGTGGCAGCGAAGGTGTGGTGCTACTACTGCGATCGTGAATTCGAGGACGAGAAGATACTGGTACAGCACCAGAAGGCCAAGCACTTCAAATGCCATGTCTGTCACAAGAAGCTCTCCACCGCCGGTGGCATGGTCATCCACGTCCTCCAGGTCCACAAAGAGACCGTTTCCAAGGTTCCCAATGCAAAACCTGGCCGCGAGTCAACCGAAATTGAAATATATGGAATGGAAGGAATCCCACATGAAATCTTAGCAGCTCATTATGGAGAGGAAGATGAAGATGTCCCATCAAAATTGGCTAAAGTGGAGATCCCAAGTTCACAACTTGGTGGTGGTGCAGTACCTGGAACTTTAGGAATTGGAGTTCCTCCTCAACCAGCATTAGGTGCAATGCCACCAGTTTACAATCCTGCATTAGCAGTGCCTCCTGCTGGTTGGCCGGTTCCTGCTCGTCCCCAGCCTTGGTACTCTCAGCACCCAGCAATCTCTATTCCTCCTGCTCCATTGGGGATGACACAACAGCCTTTGTTTCCAATACAACCTGTCAAGCCTCCTCTGCCATCCACTATGTCTTCTGCTCTTCAACCATCATTGCAAATAACTCCTCCTGGGCTTCCCATACCTTCACCTTCTGCTCCTTTACCTCAACCCTTGTTCCCTGTCGGTGTTAATAACAATTTACCTACTAAAAATTCACCATTTTCTACACCTATGCTTTCAACAAGTATTCCATTAAGCTCTCAAGCAGAACTTAATAGCTCAATTGAAGCACATTCCAGCACTAACAGTTCTCTTGCAAGTAGCTACAGTGCCCCAAGCATTCAAGGTGGGCCATCAATCAACTCACATTCTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGGCCACCTCCTGTCATTGCAAATAAAGTTCCTGCTACTCAGCCAGCCGGCAACGAGGTGTATTTGGTTTGGGATGATGAGGCAATGTCCATGGAGGAAAGAAGAATGTCATTAATGAAGTACCAGGTGCATGATGAAACTAGCCAGATGAGCTCAATTGATGCAGCCATAGATAGAAGGATACTGGAGAGCAGGCTTGCTGGCCGAATGGCATTTTAG 1128 47.34 MGKKKKRVAAKVWCYYCDREFEDEKILVQHQKAKHFKCHVCHKKLSTAGGMVIHVLQVHKETVSKVPNAKPGRESTEIEIYGMEGIPHEILAAHYGEEDEDVPSKLAKVEIPSSQLGGGAVPGTLGIGVPPQPALGAMPPVYNPALAVPPAGWPVPARPQPWYSQHPAISIPPAPLGMTQQPLFPIQPVKPPLPSTMSSALQPSLQITPPGLPIPSPSAPLPQPLFPVGVNNNLPTKNSPFSTPMLSTSIPLSSQAELNSSIEAHSSTNSSLASSYSAPSIQGGPSINSHSYASGPNTGGPSIGPPPVIANKVPATQPAGNEVYLVWDDEAMSMEERRMSLMKYQVHDETSQMSSIDAAIDRRILESRLAGRMAF* 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1071685 1078368 - Vvi1g107 Vvi1g107 769307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g107 375 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Vvi1g107 375 SMART c2h2final6 36 59 IPR013087 -
Vvi1g107 375 SMART c2h2final6 12 35 IPR013087 -
Vvi1g107 375 MobiDBLite consensus disorder prediction 270 298 - -
Vvi1g107 375 MobiDBLite consensus disorder prediction 270 314 - -
Vvi1g107 375 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Vvi1g107 375 PANTHER BUB3-INTERACTING AND GLEBS MOTIF-CONTAINING PROTEIN ZNF207 1 375 - -
Vvi1g107 375 PANTHER ZINC FINGER PROTEIN 207 1 375 - -
Vvi1g107 375 Gene3D Classic Zinc Finger 2 66 - -
Vvi1g107 375 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14459 None None None None Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g107 - - vvi:100266425 731.48