Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1070 ATGAGAGCTTCGAATATAAAACATCAAAAATGGGTGGGTAGAGGGGCTGTGTGTACTGTTTCTGGAAGAGTGGTTGAGAAACCAGAAAATGAAAAGCCTACTTTTTCTTCTCAACTCCTGAAAACAATGGATGTCCATTTCAGGAGAACAATGACCAACTCAAACCCACCTCTCTTGCAACATTATGGAGTTCTTTGCCAACACGGAGAAACTCCTGCAGTTCAGCAACGTGATTGTGGGAACAATGGAGCTGCCATGGAGGAATGCCAGCTGCCATTGATAGATCTTGAGGGCCTGTGGAGTGAGAGTGAAGAGGAGAGGCTGGCCTGCGCATCAGCAATTGGTAGGGCGTCATCCAAGTGGGGATTCTTCCAAGTGGTGAACCATGGGATCAGGCCTGAGCTGCTGAGTGAGATGAGGAGAGAGCAAGTGAAGTTGTTTGAGACACCATTTGAAAGGAAGGCTGCTTGTCAGCTTCTGGATAATTCATACAGGTGGGGAACTCCAACTGCTACTTGTCCCAAGGAGCTCTCTTGGTCTGAAGCTTTCCACATTCCTCTCACTAAGGTTTCAGAAGAAGCTTGCTATGGAGAGTTTTGCTCCCTGAGGGAAGTGATGCAGGAATTTGCAAAGGCCATGTCAAACCTTGCAAGGTTGCTTGCAGGAGTTCTAGCAGAGAGTTTGGGACACCAGAAGGGAGTGTTTGATGAAATTTGCGACGAAAACACCTGCTTTCTTCGCTTGAATCGCTACCCTCCCTGTCCAGTATCGCCAGAGGTGTTTGGCTTAGTCCCGCACACTGACAGTGATTTCCTCACAATACTTTACCAGGATGAAGTCGGTGGACTTCAACTCATGAAGGATTCCAAATGGGTAGCTGTTAAACCAAATAAAGACACACTTATTGTCAACATTGGCGATCTTTTTCAGGCGTGGAGCAACAATGAGTACAAAAGTGTAGAGCATCAGGTGATGGCTAATGCAATAAAGGAGAGATACTCAATAGCTTACTTCCTATGCCCCTCATATGATGCTTTCATAGGGAGTTGCAGCGAGCCTACTATTTACAGAAAATTCACTTTTGGAGAGTACAGACAACAAGTTCAAGAAGATGTCAAGAAAACTGGACACAAAGTAGGCCTTCCAAGGTTTCTGCTTCAGACCACACAATAG 1173 45.87 MRASNIKHQKWVGRGAVCTVSGRVVEKPENEKPTFSSQLLKTMDVHFRRTMTNSNPPLLQHYGVLCQHGETPAVQQRDCGNNGAAMEECQLPLIDLEGLWSESEEERLACASAIGRASSKWGFFQVVNHGIRPELLSEMRREQVKLFETPFERKAACQLLDNSYRWGTPTATCPKELSWSEAFHIPLTKVSEEACYGEFCSLREVMQEFAKAMSNLARLLAGVLAESLGHQKGVFDEICDENTCFLRLNRYPPCPVSPEVFGLVPHTDSDFLTILYQDEVGGLQLMKDSKWVAVKPNKDTLIVNIGDLFQAWSNNEYKSVEHQVMANAIKERYSIAYFLCPSYDAFIGSCSEPTIYRKFTFGEYRQQVQEDVKKTGHKVGLPRFLLQTTQ* 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17965018 17966964 - Vvi1g1070 Vvi1g1070 770270

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1070 390 SUPERFAMILY Clavaminate synthase-like 84 369 - -
Vvi1g1070 390 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 240 341 IPR005123 -
Vvi1g1070 390 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 76 378 - -
Vvi1g1070 390 Gene3D - 65 374 IPR027443 -
Vvi1g1070 390 Pfam 2OG-Fe(II) oxygenase superfamily 246 341 IPR044861 -
Vvi1g1070 390 Pfam non-haem dioxygenase in morphine synthesis N-terminal 91 185 IPR026992 -
Vvi1g1070 390 PANTHER OS02G0630300 PROTEIN 76 378 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1070 - - - vvi:100854674 706.442
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1070 . . . . . . . . Cmo04g01062 . Cma04g00986 . Car04g00924 . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo11g01001 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01194 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012990 0 1 0 0 0 1 2 1 1 0 1 1 1 1 1 2 1 2 2 1 1 1 1 0 1 1 1 1 1 1 28