Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1071 ATGGCAAGGTACTCGTTTTTGTTGTTTTTGTTCTCTTTGATGCACCTTCAACCTCTGGTGAGATCAGGCGATGGTGAAACGCTTCTAGCCCTAAAATCGTGGATCGATCCTTCGAACTCGCTGCAATGGAGAGGAAGCGACTTCTGCAAATGGCAAGGAGTGAAGGAATGTATGAGAGGCAGAGTCACCAAGCTTGTTCTCGAGCATTTGAACTTGAATGGAACTTTGGATGAGAAGAGCCTGGCACAGTTGGATCAGCTTCGAGTGCTCAGCTTCAAAGAGAACTCTCTTTCCGGCCAAATCCCCGACCTCTCCGGCCTAATCAACCTAAAATCCCTCTTCCTCAATAATAACAACTTCTCCGGCGACTTCCCTAGCTCCCTCTCCGGCCTGCACCGCCTCAAAGTGATCATCCTCGCAGGAAACCAAATATCCGGCCAGATTCCAGCGAGTCTACTCAAGCTGCAGCGACTGTACATTCTGTACTTGCAAGACAACCGCCTTACCGGAGAAATCCCTCCCCTCAACCAAACTAGCCTCCGGTTCTTCAATGTGTCTAACAACCAACTCTCCGGCGAGATTCCCCTGACTCCCGCTGTGGTTCGATTCAATCAATCATCATTCTCCAATAACCTAGAACTATGCGGCGAACAAGTTAATAGTCCATGCCCCCGCTCGCCTGCAATCAGTCCGGACGTCGGTGGAGGTGTGCTTCTAATCTGTTTGATTCTGCTCTGCGTGAGTTATAGGAGGATGAGGAGGAAGACGGTGGAGGGGAGGAGCAAAGGAAAGGCCGTCGGCGCCGTCGGATCGCCGGAAGCAGCGAACGGCGGATTTGTTGAAGGCGTCGGCGGAGACGCTGGGGAGGGGGACGATGGGAAGCACGTACAAGGCGGTGATGGAGTCTGGGTTTATAGTGACCGTGAAGAGGCTCAAGGACGCCAGATACCCCCGGCTGGAGGAGTTCAGGGCACAGATGGAGCTTCTAGGGAGGCTGAGGCACCCCAATTTGGTGCCTCTCCGTGCCTACTTCCAGGCCAAGGAGGAACGCCTCCTCGTATACGATTACTTCCCCAACGGCAGTCTCTTCTCCCTCATTCATGGATCAAGAACTTCAGGTGGTGGAAAGCCTCTTCACTGGACATCCTGCCTAAAAATTGGAGAGGACTTGGCTACTGGGTTGCTCTATATCCACCAGAACCCTGGCCTAACCCATGGGAACTTGAAATCATCCAATGTCCTGTTAGGATCTGA 1254 52.55 MARYSFLLFLFSLMHLQPLVRSGDGETLLALKSWIDPSNSLQWRGSDFCKWQGVKECMRGRVTKLVLEHLNLNGTLDEKSLAQLDQLRVLSFKENSLSGQIPDLSGLINLKSLFLNNNNFSGDFPSSLSGLHRLKVIILAGNQISGQIPASLLKLQRLYILYLQDNRLTGEIPPLNQTSLRFFNVSNNQLSGEIPLTPAVVRFNQSSFSNNLELCGEQVNSPCPRSPAISPDVGGGVLLICLILLCVSYRRMRRKTVEGRSKGKAVGAVGSPEAANGGFVEGVGGDAGEGDDGKHVQGGDGVWVYSDREEAQGRQIPPAGGVQGTDGASREAEAPQFGASPCLLPGQGGTPPRIRLLPQRQSLLPHSWIKNFRWWKASSLDILPKNWRGLGYWVALYPPEPWPNPWELEIIQCPVRI* 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17986242 17994297 - Vvi1g1071 Vvi1g1071 770271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1071 417 MobiDBLite consensus disorder prediction 277 299 - -
Vvi1g1071 417 MobiDBLite consensus disorder prediction 313 339 - -
Vvi1g1071 417 Pfam Leucine rich repeat 109 168 IPR001611 GO:0005515
Vvi1g1071 417 SUPERFAMILY L domain-like 34 198 - -
Vvi1g1071 417 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 5 230 - -
Vvi1g1071 417 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 5 230 - -
Vvi1g1071 417 Pfam Leucine rich repeat N-terminal domain 23 54 IPR013210 -
Vvi1g1071 417 Gene3D Ribonuclease Inhibitor 22 176 IPR032675 -
Vvi1g1071 417 Gene3D Ribonuclease Inhibitor 177 226 IPR032675 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1071 - - vvi:100855399 495.738