Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1072 ATGGAGAAATCAGGAGCGGCGCCCACCGGTTGCTACAAGTGTGGCCGCCCTGGCCACTGGTCACGTGACTGCCCTTCCTCTAACACTAACCCTAATCCTAACCCTAACCCGAACCCTAATTCTCAAAACCAATACTCCTCCTTTAACAAAGGCACTGCCTCCAAGCCGCTAGCCAAATCCTCCGAGAAGCCCAAAAAGGCCCCGAGAACAAGACCCAATCTCACTCCCGAGCTTCTTCTCTCCGACAATGGCCTCGGTTACGTCCTCCGCCACTTCCCTGGCGCTTTTAAGTTTCGCGGCCGCGGACATGAGGTTAGTGACTTGGGGAACCTGATTGGCTTGTACTCTGAATGGCACTCTCATTTGCTTCCGTACTACTCATTTGATCAATTTGTGCACAAGGTGGAAAAAGTGGGCACAACAAAACGTGTGAAGATATGTATCAGAGAGTTGAGAGAGAGAGTCGAAAATGGAGGTGATCTGACAAAGTTCCATGAACCACCTGTTGAACATGAAGATTGCCCAAATCATGATCAAGGGCTTCCAGCTACTGAAGAAGTTATGAACTCAGTGGATCCAAGCCATTATCAGGGAGATACATCTTTAAACCATGAGGATGTACAAGAGGACATGCTTCATGAGGTTTATAGGAGTGCTACTGAAGAACCATCTCAAACCTTGGCCAGTGACATGGTTGCTGGGGATGTACCTTCTGAAGGTAGCTCCAAGAAAGAATTACCAAATCAAGTTCCTGAGAATGGACCTATTCGCTCTGATATTCAGATCACAGAAGAGCAAAAAGCTCGAATGGAAGCTAACAGGCAGAAGGCACTGGAGAGAGCTGCAGCCCGGGTCCGTTTGCAGCAGGCAGTCTAA 876 48.74 MEKSGAAPTGCYKCGRPGHWSRDCPSSNTNPNPNPNPNPNSQNQYSSFNKGTASKPLAKSSEKPKKAPRTRPNLTPELLLSDNGLGYVLRHFPGAFKFRGRGHEVSDLGNLIGLYSEWHSHLLPYYSFDQFVHKVEKVGTTKRVKICIRELRERVENGGDLTKFHEPPVEHEDCPNHDQGLPATEEVMNSVDPSHYQGDTSLNHEDVQEDMLHEVYRSATEEPSQTLASDMVAGDVPSEGSSKKELPNQVPENGPIRSDIQITEEQKARMEANRQKALERAAARVRLQQAV* 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18001133 18011125 - Vvi1g1072 Vvi1g1072 770272

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1072 291 PANTHER TIMELESS-INTERACTING PROTEIN 6 286 - -
Vvi1g1072 291 SMART c2hcfinal6 10 26 IPR001878 GO:0003676|GO:0008270
Vvi1g1072 291 MobiDBLite consensus disorder prediction 1 77 - -
Vvi1g1072 291 SUPERFAMILY Retrovirus zinc finger-like domains 6 30 IPR036875 GO:0003676|GO:0008270
Vvi1g1072 291 Coils Coil 260 280 - -
Vvi1g1072 291 Pfam Replication Fork Protection Component Swi3 74 154 IPR012923 GO:0005634|GO:0006974|GO:0048478
Vvi1g1072 291 Gene3D - 2 41 - -
Vvi1g1072 291 PANTHER TIMELESS INTERACTING-RELATED 6 286 IPR040038 GO:0000076
Vvi1g1072 291 MobiDBLite consensus disorder prediction 219 259 - -
Vvi1g1072 291 ProSiteProfiles Zinc finger CCHC-type profile. 11 26 IPR001878 GO:0003676|GO:0008270
Vvi1g1072 291 MobiDBLite consensus disorder prediction 242 259 - -
Vvi1g1072 291 Pfam Zinc knuckle 10 26 IPR001878 GO:0003676|GO:0008270
Vvi1g1072 291 MobiDBLite consensus disorder prediction 39 56 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1072 K10904 TIPIN; TIMELESS-interacting protein - vvi:100240999 542.732
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1072 . . . . . . . Bma15g00053 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0663 Cone19ag0660 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011426 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 31