Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1073 ATGGAAGATTATTATCGAGTAGAGCGATCGCAGTCCTTAACGGAGAACTTGCCAGCAATTGGTAAATACATCCGAGACCGGAGCAATAGCTTATCGGCGGCAATCGTCAAGCGGATATCGTCTTTCAAAGAGAGCGATGAATCGAAATCGAAGTGGAATAATGTGACAGAGTTCAATCTCTCGGGACTCAAGGTGATCGTGAAGCAGAAGGATGAAAACAGAGACTTCGCGCTCAAAGGTCGAATCAGTTTTTTTTCCAGATCGAATTGCAGGGACTGTACTGCGGTTCGATTGTTCTTCAGAGAGAAAGGTCTTAAATTCGTGGAAATCAACGTCGATGTGTATCCGTCGAGAGAGAAAGAGCTGATGGAAAGAACTGGGACGTCGTCCGTACCACAGATTTTCTTCAACGAGAAGTTCTTTGGAGGTCTGGTGGCTCTGAATTCGCTTCGGAACAGCGGGGACTTTGACCGTAGGCTGACGGAGATGCTCGGGAGGAAATGCCCCGACGACGCCCCAGCACCACCGGTGTACGGTTTCGACGATTACGAGGAAGATACCACCGACGAGATGATCGCGATAGTTAGGGTTTTGCGGCAAAGACTGCCAATTCAAGACCGTCTGATGAAGATGAAAATCGTGAACAACTGCTTCGCCGGCGCTGAGATGCTGGAGGTGATGATTCAGCACTTCGATTGCGGCAGGAAGAAGGCCATTGAGATTGGGAAGCAGTTGGCTAGGAAGCACTTCATCCATCATGTCTTCAGGGAACATGATTTTGAGGCTGGAAATCATTTCTACCGTTTCCTTGAGCATGAGCCTTTTATTCCTAGATGTATCAATTTTCGGGGATCAACAAATGACAGTGAGCCCAAAACCGCTGCTGCAGTTGGCCAAAGGCTCACCAAGATAATGTCCGCAATTCTTGAGTCTTACACCTCTGATGACAGGCGCCATGTTGATTATATGGGAATTAGCAACAGTGAGGAATTCCGGAGATATGTAAATTTGGTTCAGGATCTTCACCGGGTAGACATCCTAGCACTCTCAACAGATGAGAAACTGGCCTTCTTCTTGAACCTGTACAATGCCATGGTCATCCATGCAGTGATTAGAGGAGGGCGTCCAAATGGGGTCATTGACAGGAGATCCTTCTTTTCTGACTTCCAGTACCTTGTAGGAGGCAATGTCTACTCCCTCAACATAATTAAAAACGGGATCCTCAGAAATAATCGGAGATCACCATACTCCTTAATGAAACCCTTCAGCAATGCTGACAAGCGCATAGAGCTGGCCCTTCCAAAAGTGAATCCATTAATCCATTTTGGACTCTGCAATGGAACAAGATCAAGCCCCTCGGTCAGGTTCTTCTCACCCAAAGGGGTTGAAGCAGAACTAAGATGCGCTGCAAGAGAGTTCTTCCAGAGGGACGGGATAGAGGTGGACTTGGACAAAAGGACAGTCCATCTTAGCCGGACCCTCAAGTGGTTCAATGCAGATTTTGGACAAGAGAAAGAGGTCCTCAAGTGGATCATGGATTACTTGGATGCAACTAAAGCAGGTCTGTTAACTCATCTGTTGAGCGATGGAGGAGCCGTTAATGTGGCATACCACAATTATGATTGGTCCGTGAATTCCTGA 1641 47.23 MEDYYRVERSQSLTENLPAIGKYIRDRSNSLSAAIVKRISSFKESDESKSKWNNVTEFNLSGLKVIVKQKDENRDFALKGRISFFSRSNCRDCTAVRLFFREKGLKFVEINVDVYPSREKELMERTGTSSVPQIFFNEKFFGGLVALNSLRNSGDFDRRLTEMLGRKCPDDAPAPPVYGFDDYEEDTTDEMIAIVRVLRQRLPIQDRLMKMKIVNNCFAGAEMLEVMIQHFDCGRKKAIEIGKQLARKHFIHHVFREHDFEAGNHFYRFLEHEPFIPRCINFRGSTNDSEPKTAAAVGQRLTKIMSAILESYTSDDRRHVDYMGISNSEEFRRYVNLVQDLHRVDILALSTDEKLAFFLNLYNAMVIHAVIRGGRPNGVIDRRSFFSDFQYLVGGNVYSLNIIKNGILRNNRRSPYSLMKPFSNADKRIELALPKVNPLIHFGLCNGTRSSPSVRFFSPKGVEAELRCAAREFFQRDGIEVDLDKRTVHLSRTLKWFNADFGQEKEVLKWIMDYLDATKAGLLTHLLSDGGAVNVAYHNYDWSVNS* 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18012151 18020938 - Vvi1g1073 Vvi1g1073 770273

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1073 546 SMART DEP_3 198 271 IPR000591 GO:0035556
Vvi1g1073 546 Pfam Glutaredoxin 84 140 IPR002109 -
Vvi1g1073 546 Pfam Protein of unknown function, DUF547 349 473 IPR006869 -
Vvi1g1073 546 SUPERFAMILY Thioredoxin-like 79 162 IPR036249 -
Vvi1g1073 546 Gene3D - 187 320 IPR036388 -
Vvi1g1073 546 Pfam Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) 202 269 IPR000591 GO:0035556
Vvi1g1073 546 ProSiteProfiles Glutaredoxin domain profile. 70 167 - -
Vvi1g1073 546 CDD DEP 190 268 - -
Vvi1g1073 546 PANTHER F26K24.21 PROTEIN 6 546 - -
Vvi1g1073 546 ProSiteProfiles DEP domain profile. 198 271 IPR000591 GO:0035556
Vvi1g1073 546 Gene3D Glutaredoxin 78 164 - -
Vvi1g1073 546 PANTHER ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE 6 546 - -
Vvi1g1073 546 SUPERFAMILY Winged helix DNA-binding domain 189 289 IPR036390 -
Vvi1g1073 546 CDD GRX_DEP 80 152 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1073 - - - vvi:100263256 1098.19
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1073 . . . . . . Bma14g01625 . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0665 Cone19ag0662 . . . . . . . . Bda07g01448 . Bpe11g01619 . . . . . Cmo15g00895 . Cma15g00860 . Car15g00811 . . . . . . . . . . . . . . . . . . Chy09g00445 Cme09g01240
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007007 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 2 1 1 37