Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1075 ATGAAAGGAAAGGGCGGGGCACCAGGAACCTACTTCCTGTTGAATACCAAAGCAAAAATTCCTGCTATAGGTCTGGGGACATGGCAGAGTGGAGGGGACCTTTGTGTTGAAGCTGTAAAAAGGGCGTTGTCAGAGGGTTATCGTCAAATAGATTGTGCCCATCTTTATGGGAATGAGGTTGAAGTCGGGGAAGCACTGGCTGAGGCTTTCAATGGTTCACTGAAGAGGGAGGATGTTTTTTTGACTTCTAAGCTGTACTGCACGATGAATTCGCTCAATAAAATTGAGAATTCTGTTAGAGTTTCTCTTAAGAACTTAGGAGTTACATACTTAGATCTCTATTTGATGCATTGGCCAGACATTACAGCGTTTGGTGATGCTACGGATCCTCCTTCCAATTCTGGAAATGACCATAGGCAGTTTTTGAACCGATTGAAGAAAGCATGGAAAGCTATGGAGGGTCTGATTGAGTTGGGTCTGGTTCGAGCTATTGGAGTTAGCAATTTTGGGGTTCAGCAGATTAAGGAACTGCTTAAATTCGCAAAGATTGTACCCGCGGTAAATCAGGCAGAATTGCATCCTTTCTGGAGGCAAGATGAGCTCGTGAAGTTTTGTCAATCAAAGGGCATCCATGTATCTGCTCACACACCTTTAGGAGTACCAGCTTCTGTTCATGGGCCGATGTTGAAATTGTCGGTTGTTGCAGAAATCGCAGATAGACATAAAAAGACACCCGAGCAGGTCATTTTACGGTGGGGACTGCAGAGAGGGACCAGTGTTCTACCTTGTAGTCTGAAGGCTGATCGGATCAGGAAAAACATAGACATCTTCAGTTGGTCTCTGTCAGATGATGAGTGTAACTGCCTGAACCAGATAGAACCTCAAGTATGTTTATTTGGAAACGGTCCTCTGAATAACCTCCCAAACAGTGGCTTTATGCCTGGAAGTGGCCCCCTTCAGTCTGTGCGCGAGATGGAAGACGACGTGGAGTCCAATACTTGA 1002 45.31 MKGKGGAPGTYFLLNTKAKIPAIGLGTWQSGGDLCVEAVKRALSEGYRQIDCAHLYGNEVEVGEALAEAFNGSLKREDVFLTSKLYCTMNSLNKIENSVRVSLKNLGVTYLDLYLMHWPDITAFGDATDPPSNSGNDHRQFLNRLKKAWKAMEGLIELGLVRAIGVSNFGVQQIKELLKFAKIVPAVNQAELHPFWRQDELVKFCQSKGIHVSAHTPLGVPASVHGPMLKLSVVAEIADRHKKTPEQVILRWGLQRGTSVLPCSLKADRIRKNIDIFSWSLSDDECNCLNQIEPQVCLFGNGPLNNLPNSGFMPGSGPLQSVREMEDDVESNT* 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18082561 18106134 - Vvi1g1075 Vvi1g1075 770275

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1075 333 PRINTS Aldo-keto reductase signature 42 66 IPR020471 GO:0016491
Vvi1g1075 333 PRINTS Aldo-keto reductase signature 101 119 IPR020471 GO:0016491
Vvi1g1075 333 PRINTS Aldo-keto reductase signature 152 169 IPR020471 GO:0016491
Vvi1g1075 333 PRINTS Aldo-keto reductase signature 186 215 IPR020471 GO:0016491
Vvi1g1075 333 PRINTS Aldo-keto reductase signature 228 252 IPR020471 GO:0016491
Vvi1g1075 333 PIRSF AKR 7 302 IPR020471 GO:0016491
Vvi1g1075 333 Gene3D - 5 301 IPR036812 -
Vvi1g1075 333 PANTHER ALCOHOL DEHYDROGENASE [NADP(+)] A-RELATED 8 222 - -
Vvi1g1075 333 PANTHER ALCOHOL DEHYDROGENASE [NADP(+)] A-RELATED 223 328 - -
Vvi1g1075 333 ProSitePatterns Aldo/keto reductase family signature 2. 152 169 IPR018170 GO:0016491
Vvi1g1075 333 SUPERFAMILY NAD(P)-linked oxidoreductase 11 298 IPR036812 -
Vvi1g1075 333 PANTHER ALDO/KETO REDUCTASE 8 222 - -
Vvi1g1075 333 PANTHER ALDO/KETO REDUCTASE 223 328 - -
Vvi1g1075 333 MobiDBLite consensus disorder prediction 309 333 - -
Vvi1g1075 333 Pfam Aldo/keto reductase family 23 292 IPR023210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1075 K00002 AKR1A1, adh; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] - vvi:100249597 652.514
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1075 Blo01g00385 . . . . . . . . . . . . . . . . Bhi07g00153 . . . Hepe01g0358 . . . . . . . . . . . . . . . Chy10g00095 Cme10g01125 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01008 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0069070 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1