Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1078 ATGGACTATGAAAGGATCCAAAAGCCTCAGGTTGGTGGAGGGTTTTCTCCGGGAAAGTTGAGGACTATGCTCTTGGGAGTGGAGAAGAAGAGGAAGGAAGAAGAAGGGCTTGATTCAAATTTCTCATTGAGATCTCAGGCTTCCGAGGTCGATGATGGAGGTGGTAGTTATTCTGACAATTGCAAAGATCTAGATGTTGTAAGTGAACTTCCTGAATGTTCCACTTCAGCGGCAGCTGACTCATTAGCACCAGAGATGATTAATGACCATCGATTGAAAGATCACCCTTCAGTTAATCCGAGAATTAGGTTTCAAGAAGACTTGCCTTTTGATTATGATAGTGGGCATGATGGTATGTGCGTATCCTCGTCAATATTTGAGTTCCAAAAGGCGGAGCGTGCCCCCCAGAGAGTGCCTGTTGGACCCTTCTCAAAACCTGCACCATCAAAATGGGATGATGCACAGAAATGGATTGCAAGCCCTACTTCAAACCGGCCAAAGGGTGGGCAAGGGGTTGGCTCACGAAAAGGTTATGGGAACCGGCAACCATCCACTAAGGTTGTTGTCGAAGTTCCAGATCAGAGATTGGTTCCTTTTGAAGAACCAGATACCAAGCGAATTGATCCGAGCCATTCCAAGAAGGAAAGTGCTGGGCAGAAGTTTGTTACTTGGGAAGTCGACTCGTACCCAACTGCAGATCCATATGCCAAGCCTGTTCTCATGATTGAGAATACCGTTGAAGAGTCAGCAATTAGCCTCAGTCGGCATGATCCATCCATGTCCATTCACAGTGCAACTACATTTATTCCACCTCCTTCAACTGCTAGGTCTGTGTCAATGAGAGATATGGGCACCGAAATGACTCCTATTGCCAGTCAAGAGCCTTCCAGGACTGGAACTCCTGTGAGGGCAACAACGCCGACTCGTAGTCCAACATCTTCTAGGCCTTCAACTCCAGGCAGAGGTGCACCAGCTTCATCTCCTGTTGGTCCACTTAATGACTGTCTGGATAGTAACAAGAATGAGCTATCTGAAAAGGAAATACAAATGAAAACTAGGAGAGAAATAATGGTTCTTGGAACGCAGCTTGGTAAGATGAATATTGCTGCCTGGGCTAGTAAAGAGGAGGAGGATAAGGATGCATCTACATCCCTGAAAACTGTAGCAGTGGAACAACCGACTAAAAGTGTCATTGAGACACGTGCAGCAGCTTGGGAGGAGGCGGAGAAAGCTAAGTATATGGCCAGGTTTGAACGTGAAGAGCTCAAAATACAAGTATGGGAAAATCATCAGAAAGCGAAGACAGAAGCTGAGATGAGGAAAATTGAGGTGGAGGTGGAAAGGATAAGGGGAAGGGCCCATGACAGGCTGATGAACAAGCTGGCAGCTGCAAGGCACAGGGCTGAGGAGAAGCGAGCGGCAGCAGAAGCCAAGAGGAGTCGACAAGCAGCAAAAACTGAGCAGCAAGCAGAGTATATACGAAAAACTGGGCGCATCCCTTCCTCTTTTTCCTGCTGGAATTGGTGCTCCTAA 1533 47.16 MDYERIQKPQVGGGFSPGKLRTMLLGVEKKRKEEEGLDSNFSLRSQASEVDDGGGSYSDNCKDLDVVSELPECSTSAAADSLAPEMINDHRLKDHPSVNPRIRFQEDLPFDYDSGHDGMCVSSSIFEFQKAERAPQRVPVGPFSKPAPSKWDDAQKWIASPTSNRPKGGQGVGSRKGYGNRQPSTKVVVEVPDQRLVPFEEPDTKRIDPSHSKKESAGQKFVTWEVDSYPTADPYAKPVLMIENTVEESAISLSRHDPSMSIHSATTFIPPPSTARSVSMRDMGTEMTPIASQEPSRTGTPVRATTPTRSPTSSRPSTPGRGAPASSPVGPLNDCLDSNKNELSEKEIQMKTRREIMVLGTQLGKMNIAAWASKEEEDKDASTSLKTVAVEQPTKSVIETRAAAWEEAEKAKYMARFEREELKIQVWENHQKAKTEAEMRKIEVEVERIRGRAHDRLMNKLAAARHRAEEKRAAAEAKRSRQAAKTEQQAEYIRKTGRIPSSFSCWNWCS* 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18163362 18172933 + Vvi1g1078 Vvi1g1078 770278

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1078 510 MobiDBLite consensus disorder prediction 159 184 - -
Vvi1g1078 510 Coils Coil 454 487 - -
Vvi1g1078 510 MobiDBLite consensus disorder prediction 468 485 - -
Vvi1g1078 510 PANTHER OS02G0116800 PROTEIN 13 505 - -
Vvi1g1078 510 MobiDBLite consensus disorder prediction 32 59 - -
Vvi1g1078 510 PANTHER OS02G0116800 PROTEIN 13 505 - -
Vvi1g1078 510 MobiDBLite consensus disorder prediction 289 321 - -
Vvi1g1078 510 Coils Coil 432 452 - -
Vvi1g1078 510 MobiDBLite consensus disorder prediction 287 338 - -
Vvi1g1078 510 Pfam Remorin, C-terminal region 398 501 IPR005516 -
Vvi1g1078 510 MobiDBLite consensus disorder prediction 468 491 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1078 - - - vvi:100251322 967.607
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1078 . . . . . . Bma14g01623 Bma15g00051 . . . . . . . . . Bhi07g00089 . . . . . . . . . . . . . Cone13ag0667 Cone19ag0663 . . . . . Cme10g01363 . . . . Bpe11g01616 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00962 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009661 2 1 2 3 1 1 1 0 1 1 1 1 0 1 1 0 1 2 0 1 2 1 1 1 1 0 0 1 4 1 33