Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1079 ATGGTCGCGGCCACCAAGGACTCGACAGCTCCGTCTCAGCCCTCGGCAGCGCCTCCAGAGGAGGACGCGTTAAAGAGGAATACCGATTGCGTTTATTTCTTGGCGTCGCCTCTCACCTGCAAGAAGGGAAGTGAATGTGAGTATCGCCATAGTGAACATGCCCGGATGAACCCTAGGGATTGCTGGTTCTGGTTGAATGGTAATTGCTTGAATCCAAAGTGTTCGTTCCGGCATCCGCCTCTTGATGGCTTGTTGGGAACCCAAGCTACAACTCCTTCAGGATCTTCTATTCCTACATCTCACTCTTCGGGTAAACAATCAGTCCCCTGCATTTTCTTCCAGAAGGGACTGTGCTTAAAAGGTGACAGATGTGCCTTTTTGCACGGACCAAATCCTACTGGTAACAAAATCCCACAAGCGCCAGCAGCTACTCCTGGCACTGAGCCTCCGTCTCTTAAGAAGGTGTTTGGTGGCCTTGAAAAGTGTACTCAAGAGCAGAGGGTTCTGCAGCCAAACTTCTCAAAGTCGTTTGAAATGATCACAGTTTTCAGAATGGTGGTAAGGATGTTGATGAGTTTTATAGAGAGTCCTCTCCTGGTTTTGATGTCCTTGTTGATGATGATCTCAGAGATTCTGATTACTATCATGATGAAGATCAGTTTGGAGAAATGTTCCGTGATCCACATGGCTATGACTCCTATGAGCACATGCATGGGCAGTATCCTTGGGATCATCGCAGGTCTTCATCAGAGAGGATGCTAG 762 48.16 MVAATKDSTAPSQPSAAPPEEDALKRNTDCVYFLASPLTCKKGSECEYRHSEHARMNPRDCWFWLNGNCLNPKCSFRHPPLDGLLGTQATTPSGSSIPTSHSSGKQSVPCIFFQKGLCLKGDRCAFLHGPNPTGNKIPQAPAATPGTEPPSLKKVFGGLEKCTQEQRVLQPNFSKSFEMITVFRMVVRMLMSFIESPLLVLMSLLMMISEILITIMMKISLEKCSVIHMAMTPMSTCMGSILGIIAGLHQRGC* 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18179461 18184021 + Vvi1g1079 Vvi1g1079 770279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1079 253 ProSiteProfiles Zinc finger C3H1-type profile. 55 81 IPR000571 GO:0046872
Vvi1g1079 253 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 7 179 - -
Vvi1g1079 253 MobiDBLite consensus disorder prediction 1 15 - -
Vvi1g1079 253 SUPERFAMILY CCCH zinc finger 105 129 IPR036855 GO:0046872
Vvi1g1079 253 ProSiteProfiles Zinc finger C3H1-type profile. 104 131 IPR000571 GO:0046872
Vvi1g1079 253 PANTHER ZINC FINGER CCCH-TYPE-CONTAINING 11A 7 179 - -
Vvi1g1079 253 MobiDBLite consensus disorder prediction 1 22 - -
Vvi1g1079 253 ProSiteProfiles Zinc finger C3H1-type profile. 24 53 IPR000571 GO:0046872
Vvi1g1079 253 Gene3D - 18 81 - -
Vvi1g1079 253 Gene3D - 96 167 - -
Vvi1g1079 253 Pfam Zinc-finger containing family 25 80 IPR041686 -
Vvi1g1079 253 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 107 130 IPR000571 GO:0046872
Vvi1g1079 253 SMART c3hfinal6 25 52 IPR000571 GO:0046872
Vvi1g1079 253 SMART c3hfinal6 57 80 IPR000571 GO:0046872
Vvi1g1079 253 SMART c3hfinal6 105 130 IPR000571 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1079 - - - vvi:104880250 335.495
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1079 . . . . . . . . Cmo04g01052 . Cma04g00976 . Car04g00917 . . . . Bhi07g00087 . . . . . . . . . . . . . . . . . . . . Cme10g01362 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00958 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012053 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14460 PF15663 zf-CCCH_3 2.50E-12 CL0537 Vvi TF