Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi1g1080 | ATGCTTGAAGAAGCGAGTGAGTGTTTTTTGAAGATGAGGAAGTTTAGGGTGTTTCCGAAGCCTAGGTCTTGCAATGCTCTTTTACATAGGCTTTCAAAGGTAGGGAGAGGGGATTTGTCTAGGAAGTTTTTTAAAGATATGGGTGCAGCGGGGATCAAACGGTCGGTCTTTACTTATAATATAATGATAGACTATTTGTGCAAAGAAGGGGATTTGGAAATGGCGAGAAGCTTGTTTACACAGATGAAAGAGGCAGGTTTCACGCCGGATATTGTAACTTACAATTCTCTTATTGATGGGCATGGAAAGTTGGGGCTATTGGATGAGTGTATATGTATATTTGAACAAATGAAGGATGCAGATTGTGATCCTGATGTTATAACATATAATGCTTTAATAAACTGTTTTTGTAAATTTGAAAGGATGCCAAAGGCCTTTGAGTTTCTCCATGAGATGAAGGCAAATGGGTTGAAACCAAATGTTGTAACATATAGCACATTTATTGATGCTTTTTGCAAGGAAGGGATGTTGCAAGAGGCAATAAAGTTTTTTGTTGACATGAGGCGAGTTGCACTCACTCCTAATGAATTCACATATACGTCTTTGATTGATGCGAATTGTAAAGCAGGTAACTTGGCTGAAGCTTTGAAGCTGGTTGAGGAGATATTGCAAGCAGGAATTAAGTTGAATGTTGTTACTTATACGGCATTGTTGGATGGTCTTTGTGAAGAAGGGAGGATGAAGGAAGCAGAGGAAGTGTTTAGGGCAATGCTGAATGCTGGGGTGGCCCCTAACCAGGAAACCTATACTGCCCTTGTTCATGGCTTTATTAAAGCTAAAGAAATGGAGTATGCCAAGGATATTTTAAAAGAAATGAAAGAAAAATGCATCAAACCAGACTTGTTGCTCTATGGAACGATTTTGTGGGGCCTTTGCAATGAAAGCAGACTTGAGGAAGCAAAGCTTTTAATTGGCGAAATTAAGGAAAGTGGTATAAATACAAATGCTGTCATTTATACAACTCTTATGGATGCCTATTTCAAGTCAGGTCAAGCCACTGAAGCACTCACTCTGTTAGAAGAAATGCTGGACTTGGTTGATGGCTTGTGTAAAAATAATTGCTTTGAAGTGGCCAAGAAGCTGTTTGACGAAATGCTGGACAAAGGTATGATGCCAGATAAAATTGCTTACACTGCTTTGATTGATGGGAACATGAAGCATGGCAATCTTCAGGAAGCCTTGAATTTGCGAGACAGGATGATTGAAATTGGAATGGAGCTTGATCTGCATGCTTACACTGCCCTGATTTGGGGACTGTCTCACAGTGGTCAAGTGCAAAAAGCAAGGAATTTGCTTGATGAGATGATTGGAAAGGGTGTGCTTCCTGATGAGGTTGTTTATATGTGTTTGATAAAGAAGTATTATGCACTAGGGAAAGTGGATGAAGCTCTAGAACTGCAGAATGAAATGGCAAAGAGGGGTATGATTACTGGTCTTAGTGATCATGCTGTTCCTAGTGTGCAAACTTAA | 1530 | 39.74 | MLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRGMITGLSDHAVPSVQT* | 510 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 18206571 | 18208242 | + | Vvi1g1080 | Vvi1g1080 | 770280 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi1g1080 | 509 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 1 | 364 | - | - | |
| Vvi1g1080 | 509 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 365 | 501 | - | - | |
| Vvi1g1080 | 509 | Gene3D | Tetratricopeptide repeat domain | 1 | 153 | IPR011990 | GO:0005515 | |
| Vvi1g1080 | 509 | SUPERFAMILY | TPR-like | 106 | 424 | IPR011990 | GO:0005515 | |
| Vvi1g1080 | 509 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 300 | 334 | IPR002885 | - | |
| Vvi1g1080 | 509 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 265 | 299 | IPR002885 | - | |
| Vvi1g1080 | 509 | PANTHER | OS06G0565000 PROTEIN | 1 | 364 | - | - | |
| Vvi1g1080 | 509 | PANTHER | OS06G0565000 PROTEIN | 365 | 501 | - | - | |
| Vvi1g1080 | 509 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 335 | 365 | IPR002885 | - | |
| Vvi1g1080 | 509 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 230 | 264 | IPR002885 | - | |
| Vvi1g1080 | 509 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 463 | 497 | IPR002885 | - | |
| Vvi1g1080 | 509 | TIGRFAM | PPR: pentatricopeptide repeat domain | 431 | 464 | IPR002885 | - | |
| Vvi1g1080 | 509 | TIGRFAM | PPR: pentatricopeptide repeat domain | 337 | 364 | IPR002885 | - | |
| Vvi1g1080 | 509 | TIGRFAM | PPR: pentatricopeptide repeat domain | 57 | 91 | IPR002885 | - | |
| Vvi1g1080 | 509 | TIGRFAM | PPR: pentatricopeptide repeat domain | 127 | 161 | IPR002885 | - | |
| Vvi1g1080 | 509 | TIGRFAM | PPR: pentatricopeptide repeat domain | 365 | 393 | IPR002885 | - | |
| Vvi1g1080 | 509 | TIGRFAM | PPR: pentatricopeptide repeat domain | 197 | 231 | IPR002885 | - | |
| Vvi1g1080 | 509 | TIGRFAM | PPR: pentatricopeptide repeat domain | 268 | 300 | IPR002885 | - | |
| Vvi1g1080 | 509 | TIGRFAM | PPR: pentatricopeptide repeat domain | 92 | 126 | IPR002885 | - | |
| Vvi1g1080 | 509 | TIGRFAM | PPR: pentatricopeptide repeat domain | 23 | 55 | IPR002885 | - | |
| Vvi1g1080 | 509 | TIGRFAM | PPR: pentatricopeptide repeat domain | 162 | 195 | IPR002885 | - | |
| Vvi1g1080 | 509 | TIGRFAM | PPR: pentatricopeptide repeat domain | 232 | 265 | IPR002885 | - | |
| Vvi1g1080 | 509 | Gene3D | Tetratricopeptide repeat domain | 224 | 295 | IPR011990 | GO:0005515 | |
| Vvi1g1080 | 509 | Gene3D | Tetratricopeptide repeat domain | 296 | 364 | IPR011990 | GO:0005515 | |
| Vvi1g1080 | 509 | Gene3D | Tetratricopeptide repeat domain | 154 | 223 | IPR011990 | GO:0005515 | |
| Vvi1g1080 | 509 | Pfam | PPR repeat | 23 | 52 | IPR002885 | - | |
| Vvi1g1080 | 509 | Pfam | PPR repeat | 396 | 424 | IPR002885 | - | |
| Vvi1g1080 | 509 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 55 | 89 | IPR002885 | - | |
| Vvi1g1080 | 509 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 20 | 54 | IPR002885 | - | |
| Vvi1g1080 | 509 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 160 | 194 | IPR002885 | - | |
| Vvi1g1080 | 509 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 125 | 159 | IPR002885 | - | |
| Vvi1g1080 | 509 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 428 | 462 | IPR002885 | - | |
| Vvi1g1080 | 509 | Gene3D | Tetratricopeptide repeat domain | 365 | 504 | IPR011990 | GO:0005515 | |
| Vvi1g1080 | 509 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 90 | 124 | IPR002885 | - | |
| Vvi1g1080 | 509 | Pfam | PPR repeat family | 55 | 101 | IPR002885 | - | |
| Vvi1g1080 | 509 | Pfam | PPR repeat family | 428 | 472 | IPR002885 | - | |
| Vvi1g1080 | 509 | Pfam | PPR repeat family | 124 | 173 | IPR002885 | - | |
| Vvi1g1080 | 509 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 393 | 427 | IPR002885 | - | |
| Vvi1g1080 | 509 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 195 | 229 | IPR002885 | - | |
| Vvi1g1080 | 509 | Pfam | Pentacotripeptide-repeat region of PRORP | 208 | 380 | IPR033443 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi1g1080 | K17710 | PTCD1; pentatricopeptide repeat domain-containing protein 1 | - | vvi:100241074 | 814.683 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi1g1080 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cma15g00864 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0008527 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 0 | 2 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 0 | 2 | 5 | 1 | 34 |