Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1087 ATGGCAGAAGACAATAAAGAAGTCAAGTCATTTAAGGATTTGGGGATATGTGAGCAATTGGTGGAGGCTTGTGAAAATTTAGGATGGAAAACACCATCTAAGATACAGGCTGAAGCCATTCCTCATGCACTAGAAGGAAAGGACTTGATTGGGCTTGCACAAACAGGTTCTGGTAAGACCGGAGCATTTGCACTTCCCATACTCCAAGCCCTTTTAGATACTCCTCAAGTGCTGTTTGCTTGTGTGCTCTCCCCTACTCGGGAACTTGCTATTCAGATTGCAGAGCAGTTTGAAGCTTTAGGTTCTGGAATTGGTCTAAAGTGTGCTGTGCTTGTTGGAGGAGTGGACCATACACAACAAGCAATTGCCCTTGCAAAGCGCCCACATATTGTCGTGGGTACACTTGGATGA 411 45.26 MAEDNKEVKSFKDLGICEQLVEACENLGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLDTPQVLFACVLSPTRELAIQIAEQFEALGSGIGLKCAVLVGGVDHTQQAIALAKRPHIVVGTLG* 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18487514 18500361 + Vvi1g1087 Vvi1g1087 770287

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1087 136 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 136 IPR027417 -
Vvi1g1087 136 Pfam DEAD/DEAH box helicase 34 135 IPR011545 GO:0003676|GO:0005524
Vvi1g1087 136 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 40 136 IPR014001 -
Vvi1g1087 136 PANTHER BNAC02G41920D PROTEIN 2 136 - -
Vvi1g1087 136 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 9 37 IPR014014 GO:0003724
Vvi1g1087 136 Gene3D - 1 136 IPR027417 -
Vvi1g1087 136 PANTHER RNA HELICASE 2 136 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1087 K14777 DDX47, RRP3; ATP-dependent RNA helicase DDX47/RRP3 [EC:3.6.4.13] - vvi:100246466 267.314
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1087 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015794 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 2 0 0 0 2 0 0 0 0 0 0 0 1 6