Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1089 ATGTCAAAAATTTTACCACGTGTCATCTCTCTAGTGGCCGACAGGATCCACATTCATTGGAAAATCTTAGAGGATAAGGAATCTACTCATGATCATCATCTTCCTGTCATTGAATTAGACGTCGAGCTCCCGGATTTGACACCTAAAGATGAGAATTTGAATGATTTCTTATGTGGGTTGTTCAGAGATCCTAGAAGTGAAGAGCTGGCGTTTGACTACTACCAGAAAGTGAAAGAAAGGCCTGAATTTAGGCCTGACAAGGAAACCTTAGAGCGTATAATCAGATTAATTAGTAGTTGCATTAGGGCTAGAAAATTCAGAATTACAGAAAGTCTTCTCGAAGTTTTTAGTTATAATGATGATGTCGCTCTCTTGGTCTTCAATTCAGCAATGGGGGGGTATAACAAGCTCCATATGTTCAGTAGCACAATTGCAGTGTATGATCGAATGAAGTCTGCTGGAGTTGTTCCGAATTCGGAGTCTTATTATAGGATAATGGAAGCTTACATTAAAATTCGAGATTATGAGAAAGTTGTCACATTGTTTCAAGAATTTGAAAGTAGGAAGATCGATTCGTCGCCTTTTTCCACTCAAATTTATAGAATTCTATGTGAGTCACTAGGGAAAATGGGGCGAGCTTTTGAAGCTCTGGAGTTCTTCAGAGATATGACAAAGAAGGGGATCTTGGAGGATTCTGCGGTTTACTCTTCTTTGATTTGTTCATTTGCAAGTATTCGAGAAGTGAAGGTAGCAGAAGAGCTGTTCAGAGAAGCAGAGGAGAAGAAAATTTTGAGGGATCCCGAGGTGTTTCTGAAACTTGTGTTGATGTATGTTGAAGAAGGGCTTATGGAGAGGACGCTTGAGATCGTTAAGGCCATGAAGAATGTGGAAATCCGGGTTTCTGATTGCATATTTTGTGCTATAGTTAATGGCTTCGCCAAGAAGAGAGGGCTCAGGGCTGCAGCCAAAGTCTATGATGAGCTGATCTTGCAGGGCTGTGAACCAGGACAAGTGACCTACGCTTCAATCATAAATGTCTATTGTCGTATGGAGCTCTACTCAAAAGCAGAAATGGTGTTTTCAGAAATGGAAAAGAAGGGGTTCAATAAATGCGTGGTGGCCTATTCTAGCATGGTGGTTATGTATGGAAAAACCGGTAGGCTGAGGGAGGCGATGAGGCTGGTCGCGAAGATGAAAGAAAGAGGATGCGAGCCCAATGTATGGGTTTACAACTCGCTCATGGACATGCACGGGAGAGTCAAGAATTTGAGGCAAGTGGAGAAGCTATGGAAGGAGATGAAGCGAAAGAAGGTGGTTCCTGATAGAGTGAGCTACACTAGTGTTATAAGCGCTTACAGCAAGGCAGGAGATTTTGAAACCTGCATGAGATTTTACCACGAATTTAGGATGAATGGAGGTGTCATCGACAGGGTTATTGCTGGGATCATGGTTGGGATTTTCTCCAAGAGTGGTCGGGTGGATGAGTTGGTTAAGCTTTTGCAGGATATGAAGACAGAAGGAACCGGGCTAGATGAGAGGCTGTATAGATCAGCCTTGAATGCTTTGAGGGACGCGGGGCTGCAAATGCAAGCAAGATGGTTGCAAGAGAGCTTCGACACAACTTTTGTTGAGGACTTAATGAGATTAGGAATTGAATAA 1659 42.62 MSKILPRVISLVADRIHIHWKILEDKESTHDHHLPVIELDVELPDLTPKDENLNDFLCGLFRDPRSEELAFDYYQKVKERPEFRPDKETLERIIRLISSCIRARKFRITESLLEVFSYNDDVALLVFNSAMGGYNKLHMFSSTIAVYDRMKSAGVVPNSESYYRIMEAYIKIRDYEKVVTLFQEFESRKIDSSPFSTQIYRILCESLGKMGRAFEALEFFRDMTKKGILEDSAVYSSLICSFASIREVKVAEELFREAEEKKILRDPEVFLKLVLMYVEEGLMERTLEIVKAMKNVEIRVSDCIFCAIVNGFAKKRGLRAAAKVYDELILQGCEPGQVTYASIINVYCRMELYSKAEMVFSEMEKKGFNKCVVAYSSMVVMYGKTGRLREAMRLVAKMKERGCEPNVWVYNSLMDMHGRVKNLRQVEKLWKEMKRKKVVPDRVSYTSVISAYSKAGDFETCMRFYHEFRMNGGVIDRVIAGIMVGIFSKSGRVDELVKLLQDMKTEGTGLDERLYRSALNALRDAGLQMQARWLQESFDTTFVEDLMRLGIE* 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18520400 18526595 + Vvi1g1089 Vvi1g1089 770289

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1089 552 Pfam PPR repeat 126 155 IPR002885 -
Vvi1g1089 552 Pfam PPR repeat 482 507 IPR002885 -
Vvi1g1089 552 Pfam PPR repeat 206 228 IPR002885 -
Vvi1g1089 552 Pfam PPR repeat 443 472 IPR002885 -
Vvi1g1089 552 Pfam PPR repeat 234 262 IPR002885 -
Vvi1g1089 552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 230 IPR002885 -
Vvi1g1089 552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 123 157 IPR002885 -
Vvi1g1089 552 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 19 95 - -
Vvi1g1089 552 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 94 540 - -
Vvi1g1089 552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Vvi1g1089 552 TIGRFAM PPR: pentatricopeptide repeat domain 373 407 IPR002885 -
Vvi1g1089 552 TIGRFAM PPR: pentatricopeptide repeat domain 409 441 IPR002885 -
Vvi1g1089 552 TIGRFAM PPR: pentatricopeptide repeat domain 443 476 IPR002885 -
Vvi1g1089 552 TIGRFAM PPR: pentatricopeptide repeat domain 126 159 IPR002885 -
Vvi1g1089 552 TIGRFAM PPR: pentatricopeptide repeat domain 234 266 IPR002885 -
Vvi1g1089 552 TIGRFAM PPR: pentatricopeptide repeat domain 338 368 IPR002885 -
Vvi1g1089 552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Vvi1g1089 552 Gene3D Tetratricopeptide repeat domain 61 190 IPR011990 GO:0005515
Vvi1g1089 552 Gene3D Tetratricopeptide repeat domain 191 262 IPR011990 GO:0005515
Vvi1g1089 552 Gene3D Tetratricopeptide repeat domain 263 365 IPR011990 GO:0005515
Vvi1g1089 552 Gene3D Tetratricopeptide repeat domain 366 436 IPR011990 GO:0005515
Vvi1g1089 552 Gene3D Tetratricopeptide repeat domain 437 509 IPR011990 GO:0005515
Vvi1g1089 552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 441 475 IPR002885 -
Vvi1g1089 552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Vvi1g1089 552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 265 IPR002885 -
Vvi1g1089 552 Pfam Pentatricopeptide repeat domain 359 418 IPR002885 -
Vvi1g1089 552 Pfam Pentatricopeptide repeat domain 289 347 IPR002885 -
Vvi1g1089 552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Vvi1g1089 552 PANTHER OSJNBA0088A01.11 PROTEIN 94 540 - -
Vvi1g1089 552 PANTHER OSJNBA0088A01.11 PROTEIN 19 95 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1089 - - - vvi:100256233 1002.66
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1089 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0676 . . . . . . . . . . . . . . . . . Cmo15g00902 . Cma15g00867 . Car15g00816 . . Bhi12g01005 . . . . . Lcy10g1566 Cla01g00682 Cam01g0715 Cec01g0706 Cco01g0736 Clacu01g0701 Cmu01g0673 Cre09g1832 Lsi09g00740 Csa05g01316 . Cme09g01257
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013247 0 3 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 27