Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1090 ATGGCTGATGAGCAGGATCTCCTGCTGCCTATTGCCAATGTGGGTCGGATCATGAAGCAAATCCCGCCACCAAGTGCCAAGATTTCCAAAGAAGCCAAAGAAACAATGCAAGAATGTGTATCTGAGTTCATAAAGTTTGTTACTGGCGAAGCATCTGAAAAGTGTCAAAGGGAGAACCGAAAGACCGTGAATGGAGATGACATTTGTTGGGCACTGAGTGCTCTGGGATTTGATGACCATGCTGAGGCTATAGTAAGGTATTTGCATAAGTACAGGGAGTTTGAAAGAGAGAGACCAAATCAAAGGGTCCAAAATGAAGTCGATAGCACTCGAACCAAATCTGGAGCATCAGACTATAAATGCATCCAAGCGGGGAAGCAGACTGAAACTCCTACTCCAATATTATTGTTCGAAGTTACTGATCAAAATGGTAATAGATCTCTTACAAAGCCATTTTGA 459 42.92 MADEQDLLLPIANVGRIMKQIPPPSAKISKEAKETMQECVSEFIKFVTGEASEKCQRENRKTVNGDDICWALSALGFDDHAEAIVRYLHKYREFERERPNQRVQNEVDSTRTKSGASDYKCIQAGKQTETPTPILLFEVTDQNGNRSLTKPF* 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18533068 18533527 + Vvi1g1090 Vvi1g1090 770290

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1090 152 Gene3D Histone, subunit A 1 131 IPR009072 GO:0046982
Vvi1g1090 152 PRINTS CCAAT-binding transcription factor subunit A signature 36 54 - -
Vvi1g1090 152 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Vvi1g1090 152 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Vvi1g1090 152 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 9 72 IPR003958 -
Vvi1g1090 152 SUPERFAMILY Histone-fold 5 102 IPR009072 GO:0046982
Vvi1g1090 152 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 131 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vvi1g1090 152 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-4 1 131 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1090 K08065 NFYB, HAP3; nuclear transcription Y subunit beta - vvi:100261324 310.071
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1090 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi19g672 . 8 140 CCAAT-HAP3 Transcription Factor Family AT5G47670 57.0 7.3e-41 164.5
Vvi19g673 . 8 142 CCAAT-HAP3 Transcription Factor Family AT5G47670 53.7 1.1e-36 150.6
Vvi19g672 . 20 165 CCAAT-HAP3 Transcription Factor Family AT1G21970 51.5 1.0e-37 154.1
Vvi19g659 ECH 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 85.3 3.2e-56 214.9
Vvi7g1141 . 102 210 CCAAT-HAP3 Transcription Factor Family AT4G14540 83.5 2.7e-47 185.3
Vvi13g452 ECH 11 127 CCAAT-HAP3 Transcription Factor Family AT4G14540 75.0 9.8e-45 176.8
Vvi6g332 ECH 23 126 CCAAT-HAP3 Transcription Factor Family AT4G14540 76.0 1.6e-42 169.5
Vvi8g685 . 22 115 CCAAT-HAP3 Transcription Factor Family AT4G14540 84.0 5.9e-42 167.5
Vvi5g310 ECH 15 123 CCAAT-HAP3 Transcription Factor Family AT4G14540 67.0 9.4e-40 160.2
Vvi14g217 ECH 4 142 CCAAT-HAP3 Transcription Factor Family AT1G09030 59.7 8.2e-40 160.2
Vvi13g452 ECH 1 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 83.6 8.7e-51 196.8
Vvi6g332 ECH 1 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 77.6 4.0e-48 188.0
Vvi8g685 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 76.5 8.4e-46 180.3
Vvi19g659 ECH 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 73.5 7.8e-44 173.7
Vvi7g1141 . 91 195 CCAAT-HAP3 Transcription Factor Family AT2G38880 71.4 3.6e-41 164.9
Vvi5g310 ECH 1 108 CCAAT-HAP3 Transcription Factor Family AT2G38880 64.9 2.2e-38 155.6
Vvi5g310 ECH 16 126 CCAAT-HAP3 Transcription Factor Family AT2G47810 73.9 6.9e-43 170.6
Vvi14g217 ECH 1 112 CCAAT-HAP3 Transcription Factor Family AT2G47810 70.5 3.4e-42 168.3
Vvi19g659 ECH 22 129 CCAAT-HAP3 Transcription Factor Family AT2G47810 69.7 4.2e-40 161.4
Vvi1g1090 . 1 100 CCAAT-HAP3 Transcription Factor Family AT2G47810 73.0 4.7e-39 157.9
Vvi7g243 ECH 1 96 CCAAT-HAP3 Transcription Factor Family AT2G47810 77.1 1.0e-38 156.8
Vvi7g1141 . 105 202 CCAAT-HAP3 Transcription Factor Family AT2G47810 74.5 1.4e-38 156.4
Vvi13g452 ECH 1 169 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 1.6e-61 232.6
Vvi8g685 . 5 150 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.8 3.5e-56 214.9
Vvi6g332 ECH 1 133 CCAAT-HAP3 Transcription Factor Family AT2G37060 79.7 3.2e-54 208.4
Vvi19g659 ECH 6 137 CCAAT-HAP3 Transcription Factor Family AT2G37060 66.9 1.0e-44 176.8
Vvi7g1141 . 95 199 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.3 5.4e-41 164.5
Vvi5g310 ECH 16 111 CCAAT-HAP3 Transcription Factor Family AT2G37060 70.8 1.6e-37 152.9
Vvi7g1141 . 95 202 CCAAT-HAP3 Transcription Factor Family AT2G13570 79.5 1.2e-45 180.3
Vvi19g659 ECH 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 79.4 4.9e-44 174.9
Vvi13g452 ECH 9 121 CCAAT-HAP3 Transcription Factor Family AT2G13570 66.9 5.7e-40 161.4
Vvi8g685 . 11 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 70.0 9.6e-40 160.6
Vvi6g332 ECH 12 124 CCAAT-HAP3 Transcription Factor Family AT2G13570 67.0 1.3e-39 160.2
Vvi5g310 ECH 4 113 CCAAT-HAP3 Transcription Factor Family AT2G13570 64.5 4.1e-38 155.2
Vvi19g659 ECH 1 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 83.3 9.4e-55 210.3
Vvi13g452 ECH 26 136 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.1 6.7e-45 177.6
Vvi7g1141 . 103 203 CCAAT-HAP3 Transcription Factor Family AT5G47640 82.2 3.3e-44 175.3
Vvi6g332 ECH 9 116 CCAAT-HAP3 Transcription Factor Family AT5G47640 77.8 2.8e-43 172.2
Vvi8g685 . 25 135 CCAAT-HAP3 Transcription Factor Family AT5G47640 73.5 1.8e-42 169.5
Vvi5g310 ECH 15 113 CCAAT-HAP3 Transcription Factor Family AT5G47640 75.8 3.8e-40 161.8
Vvi13g452 ECH 12 169 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.9 4.9e-58 221.1
Vvi6g332 ECH 1 133 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.8 1.3e-53 206.5
Vvi8g685 . 12 152 CCAAT-HAP3 Transcription Factor Family AT3G53340 75.2 2.8e-53 205.3
Vvi19g659 ECH 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.5 7.4e-46 180.6
Vvi7g1141 . 95 199 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.3 3.2e-41 165.2
Vvi5g310 ECH 6 111 CCAAT-HAP3 Transcription Factor Family AT3G53340 67.9 8.7e-39 157.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005137 2 0 1 1 2 1 0 1 1 1 1 1 1 1 1 1 1 4 1 1 1 2 1 1 1 1 2 2 2 5 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14461 PF00808 CBFD_NFYB_HMF 4.30E-27 CL0012 Vvi TF