Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1090 ATGGCTGATGAGCAGGATCTCCTGCTGCCTATTGCCAATGTGGGTCGGATCATGAAGCAAATCCCGCCACCAAGTGCCAAGATTTCCAAAGAAGCCAAAGAAACAATGCAAGAATGTGTATCTGAGTTCATAAAGTTTGTTACTGGCGAAGCATCTGAAAAGTGTCAAAGGGAGAACCGAAAGACCGTGAATGGAGATGACATTTGTTGGGCACTGAGTGCTCTGGGATTTGATGACCATGCTGAGGCTATAGTAAGGTATTTGCATAAGTACAGGGAGTTTGAAAGAGAGAGACCAAATCAAAGGGTCCAAAATGAAGTCGATAGCACTCGAACCAAATCTGGAGCATCAGACTATAAATGCATCCAAGCGGGGAAGCAGACTGAAACTCCTACTCCAATATTATTGTTCGAAGTTACTGATCAAAATGGTAATAGATCTCTTACAAAGCCATTTTGA 459 42.92 MADEQDLLLPIANVGRIMKQIPPPSAKISKEAKETMQECVSEFIKFVTGEASEKCQRENRKTVNGDDICWALSALGFDDHAEAIVRYLHKYREFERERPNQRVQNEVDSTRTKSGASDYKCIQAGKQTETPTPILLFEVTDQNGNRSLTKPF* 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18533068 18533527 + Vvi1g1090 Vvi1g1090 770290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1090 152 Gene3D Histone, subunit A 1 131 IPR009072 GO:0046982
Vvi1g1090 152 PRINTS CCAAT-binding transcription factor subunit A signature 36 54 - -
Vvi1g1090 152 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Vvi1g1090 152 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Vvi1g1090 152 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 9 72 IPR003958 -
Vvi1g1090 152 SUPERFAMILY Histone-fold 5 102 IPR009072 GO:0046982
Vvi1g1090 152 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 131 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vvi1g1090 152 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-4 1 131 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14461 PF00808 CBFD_NFYB_HMF 4.30E-27 CL0012 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1090 K08065 - vvi:100261324 310.071