Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1094 ATGGCAGCATCTCTAATTCGTCTTCACTTCCACGATTGCTTTGTCCAGGGCTGTGATGCATCAATCTTGCTTGATGATTCCTCCTCCATTCAAAGCGAGAAGAATGCACCTAATAATTTGAATTCAGTTAGAGGGTACGAAGTCATAGATAATATCAAGTCAAAGGTGGAGAGCCTATGTCCAGGCGTTGTATCTTGTGCAGACATTGTTGCCGTCGCAGCCCGAGATGCATCTGTTGCTGTTAGTGGCCCAACATGGACAGTGAGGCTTGGAAGAAGAGACTCCACCACTTCTGGCCTCAGCCAAGCTGCAACCAATCTTCCGAGCTTTAGGGACAGCCTAGACAAGCTTGTTTCCTTGTTCGGCAGCAAAGGTTTGAGTGCAAGAGACATGGTGGCCCTTTCGGGTTCCCATACAATAGGCCAAGCAAGATGTGTGACATTCCGGGATAGGATATACGACAATGGAACTGACATTGATGCCGGCTTTGCCAGTACCAGGAGACGCCGCTGTCCTGCTAATAATGGGAATGGTGATGACAATCTTGCACCTCTTGAGTTGGTGACGCCCAATTCTTTTGATAACAATTACTTCAAGAATCTCATTCGAAGGAAAGGTCTTCTTCAATCCGACCAAGTACTTTTTACCAAGCAACAATCAACCTCCCCAACTTCAAGGATAACCTCAACAAGCTTATTTATTACCTTGTTCGGTAGCAAAGGTCTGATTGCAAGAGACATGGTGGCTCTTCCATCAAGATATGTGAAATTTTGTGATAGGATGCATGTCCAGTACAAAACTAATATTGATGTTGGCTTTGCTAGTGCCATGAAGCGTGGCTATCATGCTTATAATGGGAATGGCGATGCCAATCTTGCACCACTTGATTTGGTGACACCTAATTATTTTTATAACAATTACTTCAAGAACCTCATCCAAAGAAATGGTCTTCTTCAATTAAATATCCTGCTTATATGTAGGATGCATGTTTTAAAAACTGAGTGA 1005 43.58 MAASLIRLHFHDCFVQGCDASILLDDSSSIQSEKNAPNNLNSVRGYEVIDNIKSKVESLCPGVVSCADIVAVAARDASVAVSGPTWTVRLGRRDSTTSGLSQAATNLPSFRDSLDKLVSLFGSKGLSARDMVALSGSHTIGQARCVTFRDRIYDNGTDIDAGFASTRRRRCPANNGNGDDNLAPLELVTPNSFDNNYFKNLIRRKGLLQSDQVLFTKQQSTSPTSRITSTSLFITLFGSKGLIARDMVALPSRYVKFCDRMHVQYKTNIDVGFASAMKRGYHAYNGNGDANLAPLDLVTPNYFYNNYFKNLIQRNGLLQLNILLICRMHVLKTE* 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18601358 18606800 - Vvi1g1094 Vvi1g1094 770294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1094 334 PRINTS Plant peroxidase signature 4 24 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1094 334 PRINTS Plant peroxidase signature 44 57 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1094 334 PRINTS Plant peroxidase signature 63 73 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1094 334 PRINTS Plant peroxidase signature 82 97 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1094 334 PRINTS Plant peroxidase signature 129 141 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1094 334 PRINTS Plant peroxidase signature 184 199 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1094 334 PRINTS Plant peroxidase signature 200 217 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1094 334 PRINTS Haem peroxidase superfamily signature 2 16 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1094 334 PRINTS Haem peroxidase superfamily signature 64 81 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1094 334 PRINTS Haem peroxidase superfamily signature 82 94 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1094 334 PRINTS Haem peroxidase superfamily signature 130 145 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1094 334 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1094 334 Gene3D - 1 117 - -
Vvi1g1094 334 ProSitePatterns Peroxidases active site signature. 2 13 IPR019794 GO:0004601
Vvi1g1094 334 Gene3D Peroxidase, domain 2 118 224 - -
Vvi1g1094 334 PANTHER PEROXIDASE 72-RELATED 233 325 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1094 334 PANTHER PEROXIDASE 72-RELATED 1 221 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1094 334 ProSitePatterns Peroxidases proximal heme-ligand signature. 130 140 IPR019793 -
Vvi1g1094 334 PANTHER PEROXIDASE 233 325 - -
Vvi1g1094 334 PANTHER PEROXIDASE 1 221 - -
Vvi1g1094 334 SUPERFAMILY Heme-dependent peroxidases 1 222 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi1g1094 334 CDD secretory_peroxidase 1 238 IPR033905 GO:0004601|GO:0042744
Vvi1g1094 334 SUPERFAMILY Heme-dependent peroxidases 229 325 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi1g1094 334 ProSiteProfiles Plant heme peroxidase family profile. 1 285 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1094 334 Pfam Peroxidase 228 323 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1094 334 Pfam Peroxidase 1 220 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1094 334 Gene3D Peroxidase, domain 2 225 330 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1094 K00430 - vvi:100254462 405.601