Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1097 ATGGGCTTGGCAGCTGGGAGCTCAACGTGGCCTTCCTGTGTTTCTCATGCATTTATTCTTGTTGCTGGGTTATTGATTCTCTCAAACATGCCATGTGAAGCTCAGCTTTCTTCGTCATTCTATGATAATACCTGTCCAAGTGCACTCAGTACCATCCGGACAGCCATAAGGACTGCGGTATCCCGCGAGCGTAGAATGGCAGCATCTCTGATTCGTCTCCATTTCCATGACTGCTTTGTTCAGGGCTGTGATGCATCAATCTTGCTTGATGATTCCCCCACCATTCAAAGTGAGAAAAATGCACCTAACAATAACAATTCAGTTAGAGGGTTCGAAGTCATAGACAATGTCAAGTCTCAGGTGGAGAACATTTGTCCAGGCGTTGTATCCTGTGCAGACATTCTTGCAGTGGCAGCACGAGATGCATCTGTTGCAGTTGGGGGGCCAACATGGACACTGAAGCTTGGAAGAAGAGACTCCACCACTTCAGGCCTCAGCCAAGCTGCAACTAACCTTCCAACCTTTAGAGACGGCCTGGACAGGCTTACTTCCTTGTTCAGTAGCAAAGGTTTAAGTACAAGAGACATGGTTGCTCTTTCAGGTTCCCATACAATAGGCCAAGCAAGATGTGTGACCTTCCGCGATAGAATATACGGCAATGGAACTAACATTGATGCTGGCTTTGCTAGCACTCGGAGGCGCCGGTGTCCTGCTGATAATGGGAATGGTGATGATAATCTTGCACCCCTGGATTTGGTGACACCCAATTCTTTCGATAACAATTACTTCAAGAATCTCATTCAAAGAAAAGGCCTCCTTCAATCAGACCAGGTACTTTTTAACGGAGGATCTACCGATAGTATTGTCACGGAGTATAGCAAGAGCCCTTCAACTTTCAGCTCTGATTTTTCATCTGCCATGGTAAAAATGGGAGATATCGAGCCTCTCATTGGCTCTGCTGGAGAGATAAGAAAATTCTGCAACCCTGCGTATTTCATAAACTCATTCCCAATTTTTCCTTTTGTTCCTCTCAATTTCCCACTCCAAAAGCCTTTTTTCGCCCTCATTTATTAG 1074 45.62 MGLAAGSSTWPSCVSHAFILVAGLLILSNMPCEAQLSSSFYDNTCPSALSTIRTAIRTAVSRERRMAASLIRLHFHDCFVQGCDASILLDDSPTIQSEKNAPNNNNSVRGFEVIDNVKSQVENICPGVVSCADILAVAARDASVAVGGPTWTLKLGRRDSTTSGLSQAATNLPTFRDGLDRLTSLFSSKGLSTRDMVALSGSHTIGQARCVTFRDRIYGNGTNIDAGFASTRRRRCPADNGNGDDNLAPLDLVTPNSFDNNYFKNLIQRKGLLQSDQVLFNGGSTDSIVTEYSKSPSTFSSDFSSAMVKMGDIEPLIGSAGEIRKFCNPAYFINSFPIFPFVPLNFPLQKPFFALIY* 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18638900 18641794 + Vvi1g1097 Vvi1g1097 770297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1097 357 Gene3D Peroxidase, domain 2 173 310 - -
Vvi1g1097 357 PRINTS Plant peroxidase signature 45 64 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1097 357 PRINTS Plant peroxidase signature 69 89 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1097 357 PRINTS Plant peroxidase signature 109 122 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1097 357 PRINTS Plant peroxidase signature 128 138 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1097 357 PRINTS Plant peroxidase signature 147 162 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1097 357 PRINTS Plant peroxidase signature 194 206 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1097 357 PRINTS Plant peroxidase signature 249 264 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1097 357 PRINTS Plant peroxidase signature 265 282 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1097 357 PRINTS Plant peroxidase signature 305 318 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1097 357 ProSiteProfiles Plant heme peroxidase family profile. 35 331 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1097 357 Pfam Peroxidase 53 295 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1097 357 PANTHER PEROXIDASE 72-RELATED 16 329 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1097 357 PANTHER PEROXIDASE 16 329 - -
Vvi1g1097 357 SUPERFAMILY Heme-dependent peroxidases 35 329 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi1g1097 357 ProSitePatterns Peroxidases active site signature. 67 78 IPR019794 GO:0004601
Vvi1g1097 357 ProSitePatterns Peroxidases proximal heme-ligand signature. 195 205 IPR019793 -
Vvi1g1097 357 Gene3D - 40 327 - -
Vvi1g1097 357 CDD secretory_peroxidase 35 328 IPR033905 GO:0004601|GO:0042744
Vvi1g1097 357 PRINTS Haem peroxidase superfamily signature 67 81 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1097 357 PRINTS Haem peroxidase superfamily signature 129 146 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1097 357 PRINTS Haem peroxidase superfamily signature 147 159 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1097 357 PRINTS Haem peroxidase superfamily signature 195 210 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1097 357 PRINTS Haem peroxidase superfamily signature 251 266 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1097 K00430 - vvi:100252708 644.039