Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g11 ATGGAGTCTTGGAGCCATGCCTTAGAAAAGAAGATAACCCCTTTTAATTTTGAAAATGATGGGCTTGTCTTGGATAGAGACGCAGTTGAGAGCATGGAATTCATGGAATTGGATTCCCCTGATTTGGTGAGAAAACTGCTTCCCAGTAACCCAAGTGTGGGGTTTTTAAGTGGTGAGATTGGTAGAAATTCTAGTAAAAGAATAGTTTCTCCTACTAATATGGTTACTTCAAATCCAATTTTCGGGGGAGAGGAGTCGAGTTCGAGGCTTTCAAGTTCTTTCATGGAGTCAAACAGTCAAGATTCCTCAATAATTGATTTGAAACTGGGGAGATTGGCTGATTGTATAGATGCCAAGAATAACAGATGCTCAAAAGAGGGATCAGTTTTATCTTCACTAGCTTCATCCATGCCGGCAAAGAGAGCCCGCACCACGAGTGTGTGTTCTCAAACTCCTCTCTGCCAAGTTCATGGTTGTAACATGGATCTTAGCTCCTCGAAGGACTACCATAAGAGGCATAAAGTTTGCGATGTTCATTCAAAGACTCCCAAAGTTATTGTTAATGGCATTGAGCAGAGGTTTTGTCAGCAATGTAGCAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGGAGTTGCCGTAAACGGCTTGCAGGTCACAATGAGCGTAGGAGGAAGCCTCAATTGGATACTCACTCTGGTAAACCACAGAAACTGCTTCAGTCATATCCAGGCACCAGGATTCTGGGGACTTCCTTAGCAAAGAGACCACCCTTTGTTTTCCAGGACATACTTCCTGGCAGTGTTTATTGTCCAGATGGATATGGACAAGCTAATCCATCCAGGAGCATCAAATTAGAAAAGGAGCCAATTTACAGCTCTCAATTAGTGATACCTATAAGTGGGCAGTTGCCTCCAAAATCCTTTCTCCATCTTTATGGCACCGAGAGACAATGTCCTCCTGGGTTTCTATCATCTGGAACTGAGGACTGCACTGGCTTTTACCCAGCATCAACAGTTCAAGAATTACCTGGAGTCTCAAAATCCAATTGTGCTCTCTCTCTTCTGTCAGCTCAATCGCAGGACTTGTCAAACCATTTGATGGGAATTCCAATGGCTAACCCCCCCACAGTCCAAGGCTGTCATGCTCATTACAGTGCAGTTCACAATTCTGACAAGCCAATTGGGATGAGTTCTTTGGAAAAATTTGCATCAAATGGTTCCTATTCATCTAGGATGAACTCAGTGGAAGTTGCCCAGATGGGGCCTGTAATGCTCCCTGATGGTGGTAATGCTGTTAGCTTTGAAGTCCGCACAAACAGGAATTTTCAGGGATCTGATTTTCTGAATGCTAAGTATTCTCACTCTTCTGAACGTGAACCTACAGTTGATTTACTCCAATTGTCATCACATCTTAAAAGAGTAGAGTGGCAGAGGAATTATATGCATGTGAAGCAAGAAAATGATGATTTTCACTGTTTTCCTACTACTTAA 1497 42.82 MESWSHALEKKITPFNFENDGLVLDRDAVESMEFMELDSPDLVRKLLPSNPSVGFLSGEIGRNSSKRIVSPTNMVTSNPIFGGEESSSRLSSSFMESNSQDSSIIDLKLGRLADCIDAKNNRCSKEGSVLSSLASSMPAKRARTTSVCSQTPLCQVHGCNMDLSSSKDYHKRHKVCDVHSKTPKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQLDTHSGKPQKLLQSYPGTRILGTSLAKRPPFVFQDILPGSVYCPDGYGQANPSRSIKLEKEPIYSSQLVIPISGQLPPKSFLHLYGTERQCPPGFLSSGTEDCTGFYPASTVQELPGVSKSNCALSLLSAQSQDLSNHLMGIPMANPPTVQGCHAHYSAVHNSDKPIGMSSLEKFASNGSYSSRMNSVEVAQMGPVMLPDGGNAVSFEVRTNRNFQGSDFLNAKYSHSSEREPTVDLLQLSSHLKRVEWQRNYMHVKQENDDFHCFPTT* 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 230333 235218 + Vvi1g11 Vvi1g11 769211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g11 498 ProSiteProfiles Zinc finger SBP-type profile. 151 228 IPR004333 GO:0003677
Vvi1g11 498 MobiDBLite consensus disorder prediction 218 241 - -
Vvi1g11 498 Pfam SBP domain 154 227 IPR004333 GO:0003677
Vvi1g11 498 Gene3D - 145 215 IPR036893 GO:0003677|GO:0005634
Vvi1g11 498 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 6 ISOFORM X1 17 498 - -
Vvi1g11 498 SUPERFAMILY SBT domain 152 233 IPR036893 GO:0003677|GO:0005634
Vvi1g11 498 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 498 IPR044817 GO:0003677
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14463 PF03110 SBP 2.40E-32 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g11 - - vvi:100245772 971.074