Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1100 ATGGCGGCGTCTCTAATTCGTCTCCACTTCCACGATTGCTTTGTTCAGGGCTGTGATGCATCAATCTTGCTTGATGATTCCGCCACCATTCAAAGTGAGAAAAATGCACCCAACAACAACAATTCAGTTAGAGGGTTCGAAGTCATAGACAATGTCAAGTCTCAGGTGGAGAGCATTTGTCCGGGCGTTGTTTCTTGTGCAGACATTCTTGCAGTCGCAGCTAGAGATTCATCTGTTGCTGTTGGAGGGCCAACATGGACAGTGAAGCTTGGAAGAAGAGACTCCACCACTTCAGGGCTCAGCCAAGCAGCAGCCAACCTTCCTAGCTTTAGAGACGGCCTGGACAAGCTTGTTTCCTTGTTCAGTAGCAAAGGTTTAAATACAAGAGAAATGGTTGCTCTTTCAGGTTCTCATACAATAGGGCAAGCAAGATGTGTGACATTCCGCGATAGAATACACGACAATGGAACTAACATTGATGCTGGCTTTGCTAGCACTCGGAGGCGTAGGTGTCCTGTTGATAATGGGAATGGTGATGACAATCTTGCACCCCTGGATTTGGTGACACCCAATTCTTTTGATAACAATTATTTCAAGAATCTCATTCAAAGAAAAGGCCTTCTTCAATCAGATCAGGTGCTTTTTAATGGAGGATCTACGGACAGTATTGTGACCGAGTATAGCAAGAGCCGTTCAACTTTTAGTTCGGATTTTGCAGCTGCCATGGTGAAGATGGGAGATATTGATCCTCTCACTGGTTCCAACGGGGAGATACGAAAACTCTGCAATGCCATAAACTAA 801 45.19 MAASLIRLHFHDCFVQGCDASILLDDSATIQSEKNAPNNNNSVRGFEVIDNVKSQVESICPGVVSCADILAVAARDSSVAVGGPTWTVKLGRRDSTTSGLSQAAANLPSFRDGLDKLVSLFSSKGLNTREMVALSGSHTIGQARCVTFRDRIHDNGTNIDAGFASTRRRRCPVDNGNGDDNLAPLDLVTPNSFDNNYFKNLIQRKGLLQSDQVLFNGGSTDSIVTEYSKSRSTFSSDFAAAMVKMGDIDPLTGSNGEIRKLCNAIN* 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18668410 18669651 + Vvi1g1100 Vvi1g1100 770300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1100 266 Gene3D - 1 266 - -
Vvi1g1100 266 Gene3D Peroxidase, domain 2 108 245 - -
Vvi1g1100 266 SUPERFAMILY Heme-dependent peroxidases 1 266 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi1g1100 266 Pfam Peroxidase 1 230 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1100 266 PANTHER PEROXIDASE 1 265 - -
Vvi1g1100 266 ProSitePatterns Peroxidases active site signature. 2 13 IPR019794 GO:0004601
Vvi1g1100 266 ProSitePatterns Peroxidases proximal heme-ligand signature. 130 140 IPR019793 -
Vvi1g1100 266 PANTHER PEROXIDASE 72-RELATED 1 265 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1100 266 CDD secretory_peroxidase 1 265 IPR033905 GO:0004601|GO:0042744
Vvi1g1100 266 ProSiteProfiles Plant heme peroxidase family profile. 1 266 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1100 266 PRINTS Plant peroxidase signature 4 24 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1100 266 PRINTS Plant peroxidase signature 44 57 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1100 266 PRINTS Plant peroxidase signature 63 73 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1100 266 PRINTS Plant peroxidase signature 82 97 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1100 266 PRINTS Plant peroxidase signature 129 141 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1100 266 PRINTS Plant peroxidase signature 184 199 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1100 266 PRINTS Plant peroxidase signature 200 217 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1100 266 PRINTS Plant peroxidase signature 240 253 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1100 266 PRINTS Haem peroxidase superfamily signature 2 16 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1100 266 PRINTS Haem peroxidase superfamily signature 64 81 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1100 266 PRINTS Haem peroxidase superfamily signature 82 94 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1100 266 PRINTS Haem peroxidase superfamily signature 130 145 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1100 266 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1100 K00430 - vvi:100264885 530.791