Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1101 ATGAAGGGCTCTCAACGTTTGTTTTCAGCTTTTCTCCTTGTGATTCTCCTCTTCATGGCTACTGAGATGGGCCCGATGGTGGCTGAGGCTAGGACCTGTGAGAGTCAGAGCCACCGGTTCAAGGGAACGTGTGTCAGGCAGAGCAACTGTGCTGCTGTTTGCCAGACCGAGGGTTTCCATGGAGGAAATTGCCGTGGCTTTCGTCGTCGATGCTTCTGCACTAAGCATTGTTAA 234 52.14 MKGSQRLFSAFLLVILLFMATEMGPMVAEARTCESQSHRFKGTCVRQSNCAAVCQTEGFHGGNCRGFRRRCFCTKHC* 78
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18696200 18697377 - Vvi1g1101 Vvi1g1101 770301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1101 77 ProSitePatterns Gamma-thionins family signature. 31 54 IPR008176 GO:0006952
Vvi1g1101 77 Pfam Gamma-thionin family 31 77 - -
Vvi1g1101 77 PANTHER DEFENSIN-LIKE PROTEIN 1 2 77 - -
Vvi1g1101 77 Gene3D - 31 77 IPR036574 -
Vvi1g1101 77 SMART gth_4 32 77 IPR003614 GO:0006952
Vvi1g1101 77 PRINTS Purothionin signature 32 47 IPR008176 GO:0006952
Vvi1g1101 77 PRINTS Purothionin signature 62 76 IPR008176 GO:0006952
Vvi1g1101 77 SUPERFAMILY Scorpion toxin-like 31 77 IPR036574 -
Vvi1g1101 77 PANTHER DEFENSIN PROTEIN 2 77 - -
Vvi1g1101 77 CDD Knot1 42 74 IPR003614 GO:0006952
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1101 - - - vvi:100242603 153.295
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1101 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00681 Cam01g0714 Cec01g0705 Cco01g0735 Clacu01g0700 . . . . . Cme09g01259
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001561 0 2 0 1 1 3 0 3 3 1 3 3 11 3 3 4 1 1 3 0 1 2 2 1 2 1 4 3 4 1 67