Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1103 ATGGAGAGCATTCTCTCAGCTGACAAGCAAAGCATGGTCTCCTCCTTTCTGGAGATTGCCGTGGGTCAGTCCGCCGACACAGCTAGGCAGTTCTTGCAGGCTACAAGCTGGAAACTAGAGGAAGCTATTCAGCTGTTCTATGTTGGGAATGAAGGTGGAACCATGGCTGCGTCTTCATATTCTCCACCAATTGAAAATATTAGTCCCCTGCCTGATCAAAGTTCAAGTGGATCAAGAAAGGACATTGAAAATGAAAATGTTGTACAAGATGATGGAGATGAAGTACGGCCTCCATTACCGGTGATAAGGGAGGCTCTTTATGACGATGCTATGTTGTATGGAGTATCAAGAGGAGGATATCCTTCACATGAAGCAAGTTCTTTAGTTGCATTCCGTAATTTTGATGATGAGATGAAACGCCCAGGGATTTGGGAATCAGAAAAAGGTGCTACATCTACGGCAGAAAATTCTCGAGATAATCTTGCTTCGTTATATCGGCCTCCATTTGCTTTAATGCACCATGGACCTTTTGAAAAGGCAAAAGTTGCTGCTGCAGGTCAGGATAAATGGCTCCTGGTAAACTTGCAATCCACCACAGAATTCAGCTCACATATGCTTAATCGGGATACATGGGCAAATGAAGCTGTGGCGCAAACTATTAGTACAAATTTCATCTTCTGGCAGGTATATGATGATACAAGTGAGGGCAAGAAAGTCTGCACCTACTACAAATTGGATTCTATTCCTGTGGTTCTTGTGATTGACCCCATCACAGGCCAAAAGATGCGCTCATGGTGTGGAATGATTCAACCAGAGCGTTTGCTGGAGGATCTATTACCATTCATGGATGGTGGCCCCAAGGATCATCACGTCACTCTATCTCATAAACGTCCAAGAGAAAGCTCTCTGACTCCTCCCCAGAAAATTCAAGTGGCTGCAGATGAAACTAATGAAGAAGATGAGGAAGTGCAATTGGCATTGGCAGCCTCTATGGCAAGCATGAAAGACCCTAGTGGATTGACTTCCAAGGAAAAAGATGTAACCACTACTGACAAGAAGGAAGAGATGTGTTCAGCTAAGAAGCCTGAATATCCTCCTCTGCCCGAAGAACCCAAGGGTGATAGGAACCTTCTTTGCAGGGTTGGAGTCCGTCTCCCAGATGGCCGCCGGATCCAGAGAAATTTCTTACGTACTGACCCAATACAGTTGCTTTGGTCGTTCTGCTATTCTCAACTTGAGGAAGTGGTTTCACGGCCGTTCCACTTGACCCAGGCAATACCAGGTGCTTCACAGAATCTGGACTATGATAGAGAATTAACCTTTGAAGAGTCAGGACTTGCAAACTCTATGATCTCGGTTACATGGGAATGA 1371 45.08 MESILSADKQSMVSSFLEIAVGQSADTARQFLQATSWKLEEAIQLFYVGNEGGTMAASSYSPPIENISPLPDQSSSGSRKDIENENVVQDDGDEVRPPLPVIREALYDDAMLYGVSRGGYPSHEASSLVAFRNFDDEMKRPGIWESEKGATSTAENSRDNLASLYRPPFALMHHGPFEKAKVAAAGQDKWLLVNLQSTTEFSSHMLNRDTWANEAVAQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVIDPITGQKMRSWCGMIQPERLLEDLLPFMDGGPKDHHVTLSHKRPRESSLTPPQKIQVAADETNEEDEEVQLALAASMASMKDPSGLTSKEKDVTTTDKKEEMCSAKKPEYPPLPEEPKGDRNLLCRVGVRLPDGRRIQRNFLRTDPIQLLWSFCYSQLEEVVSRPFHLTQAIPGASQNLDYDRELTFEESGLANSMISVTWE* 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18753619 18764461 - Vvi1g1103 Vvi1g1103 770303

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1103 456 Pfam UBX domain 379 430 IPR001012 GO:0005515
Vvi1g1103 456 MobiDBLite consensus disorder prediction 59 82 - -
Vvi1g1103 456 PIRSF UCP037991_UBX_2_7 3 456 IPR017346 -
Vvi1g1103 456 MobiDBLite consensus disorder prediction 334 372 - -
Vvi1g1103 456 CDD UAS 172 284 - -
Vvi1g1103 456 SUPERFAMILY UBA-like 6 47 IPR009060 GO:0005515
Vvi1g1103 456 MobiDBLite consensus disorder prediction 286 307 - -
Vvi1g1103 456 CDD UBA_TAP-C_like 16 47 - -
Vvi1g1103 456 Pfam Thioredoxin-like 177 256 - -
Vvi1g1103 456 SUPERFAMILY Thioredoxin-like 156 290 IPR036249 -
Vvi1g1103 456 MobiDBLite consensus disorder prediction 339 372 - -
Vvi1g1103 456 ProSiteProfiles UBX domain profile. 374 454 IPR001012 GO:0005515
Vvi1g1103 456 Gene3D Glutaredoxin 174 285 - -
Vvi1g1103 456 PANTHER FAS-ASSOCIATED PROTEIN 6 456 - -
Vvi1g1103 456 MobiDBLite consensus disorder prediction 59 95 - -
Vvi1g1103 456 Gene3D - 373 454 - -
Vvi1g1103 456 PANTHER UBX DOMAIN-CONTAINING PROTEIN 6 456 - -
Vvi1g1103 456 SUPERFAMILY Ubiquitin-like 364 455 IPR029071 -
Vvi1g1103 456 SMART 45neu3 160 283 IPR006577 -
Vvi1g1103 456 Gene3D - 5 49 - -
Vvi1g1103 456 CDD UBX 380 454 - -
Vvi1g1103 456 Pfam UBA-like domain 12 50 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1103 K24350 UBXN7; UBX domain-containing protein 7 - vvi:100247740 909.442
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1103 . . . . . . Bma14g01735 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe11g01725 . . . . . . . . . . . . . . . . . . . Cla11g01360 Cam11g1416 Cec11g1445 Cco11g1441 Clacu11g1575 . Cre11g1816 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007011 1 2 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 2 1 1 1 1 2 1 37