Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1105 ATGGCAGAAGAATGCACTGATAGCTCTGTTGCAACCTCTTCTTCTGCACCCAACTGGTGGGATCTCCATGGAAGCTCTACTCTTTCTTCATGTTATAATAGCACAAACCCTTGGAGCCAACCAAACCCTAACTCCAACTCTTCTTGTGAAGAGGAGGTTTCAATCTCCACATCCTTTACCAATGCTTCCAATCACTCTGGCCTTACTGTTGAGTCGTCCCGCCGCCTCATTGAGCCTGCTTCTTCCACCAACGAGTTAATTGGTGAACCTGCAGCCTCGGATAGTCATCTTTGGAGCCATGTTCTATTAAATGTTGGAAGCAATGGAGATTTGCATGGTAGTCAAGATGTTGGAGAGAACTTACTTGATGCACTCTCATCAAAGAGTTTATCAACTGGAATTTTTGAACCTGCCTGTGACTACTTGAAGAAAATGGATAACAGTTGGGAATTCACCAACTCCACATCTTTCAGTAATTTCGATAAGCATTTTAATGGGTTCAGCGAGAACTTCATTGGAAGTGAAAGGCTAACCAAGTTATCTGATTTGGTTAGCAACTGGTCTATTGCCCCTCCAGACCCAGAAGTTAACCATCAGTTCGACCCACAAATTTGCAATATGTCTTTGAGTTCACCAATGGACATTCAGTACTCACAGCCTGATCTCTGTCACATGAAACTGACATTCAATGAATCAGCATCATGTGGCATGGGAGCAAGCAGAAATTCCGGGTTGTTATCATGTTACCGTCATGATCAAAAAGTGGAGAACGATCATCATGAGATTGGATCATCCCCTGGGCCATTACTCCGCAGGCCATGTCAAAGTAATGGCATTGGATATCAATTTGGCCTTAACGGCTCGATAGTAGGAGACAACGGCAAATACTATTATGGAATCCCCAATACAACATGCAGTAACCCAAGAAATTTTGCAGATGTCATATCATTTAGCAGTAGATTATGCAAGCCTTTGGTGGATAGTCGCGAGTCTAAACCCTGTTTAAAACCGTTGAGTTTATCTGATTGTAAGAAGCAAGGACTCCAAACTTCTTCCCAAGCAAGAAATAATGCAAGAGGACAGGGGATTAGCAATGAAGGAAAGAAGAAAAGGTCTGATCAAGACACTTCAGAGGCTCAGACAGTCATGAAAAAACCTAAGCAGGAGAGCTCTGCGGTTTCTTCTGTAAAGATGCAGGCCCCGAAAGTCAAGATTGGAGATAGGATCACAGCTCTTCAGCAAATTGTGTCGCCTTTTGGAAAGACCGATACCGCATCTGTGCTATATGAAGCAATTGGATACATAAAATTTCTGCAAGAGCAAGTGCAGTTACTGAGTAATCCTTACATGAAGACTAATAAGGATCCGTGGGGAGGCTTGGATAGAAAAGATAAAGGAGATCTAAAGCTTGATCTCAAGAGCAGAGGTCTTTGTTTGGTTCCTATTTCATGTACTCCTCAAGTTTATCACGAGAACACAGGATCAGACTACTGGCCAACTACATATAGAGGGTGTTTGTATAGATGA 1527 42.7 MAEECTDSSVATSSSAPNWWDLHGSSTLSSCYNSTNPWSQPNPNSNSSCEEEVSISTSFTNASNHSGLTVESSRRLIEPASSTNELIGEPAASDSHLWSHVLLNVGSNGDLHGSQDVGENLLDALSSKSLSTGIFEPACDYLKKMDNSWEFTNSTSFSNFDKHFNGFSENFIGSERLTKLSDLVSNWSIAPPDPEVNHQFDPQICNMSLSSPMDIQYSQPDLCHMKLTFNESASCGMGASRNSGLLSCYRHDQKVENDHHEIGSSPGPLLRRPCQSNGIGYQFGLNGSIVGDNGKYYYGIPNTTCSNPRNFADVISFSSRLCKPLVDSRESKPCLKPLSLSDCKKQGLQTSSQARNNARGQGISNEGKKKRSDQDTSEAQTVMKKPKQESSAVSSVKMQAPKVKIGDRITALQQIVSPFGKTDTASVLYEAIGYIKFLQEQVQLLSNPYMKTNKDPWGGLDRKDKGDLKLDLKSRGLCLVPISCTPQVYHENTGSDYWPTTYRGCLYR* 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18906767 18909820 + Vvi1g1105 Vvi1g1105 770305

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1105 508 PANTHER TRANSCRIPTION FACTOR BHLH111 37 494 - -
Vvi1g1105 508 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 37 494 - -
Vvi1g1105 508 MobiDBLite consensus disorder prediction 346 397 - -
Vvi1g1105 508 Gene3D - 401 455 IPR036638 GO:0046983
Vvi1g1105 508 MobiDBLite consensus disorder prediction 383 397 - -
Vvi1g1105 508 MobiDBLite consensus disorder prediction 364 382 - -
Vvi1g1105 508 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 404 453 IPR036638 GO:0046983
Vvi1g1105 508 MobiDBLite consensus disorder prediction 346 363 - -
Vvi1g1105 508 CDD bHLH_AtbHLH_like 404 446 IPR045239 -
Vvi1g1105 508 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 389 438 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1105 - - - vvi:100240845 990.719
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1105 . . . . . . . . Cmo04g01049 . Cma04g00972 . Car04g00914 . . . . . . . . . . . . . . . . . . . . . . . . Chy10g00019 Cme10g01341 . . . . Bpe11g01724 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00946 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012297 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 3 1 29