Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1106 ATGAAGCGCGATTTCACGGAAATCTCCGACGACGAGTGGGACAACCACTCCTTCAAGCTCTCCCGAGCCCTCAAAAAGTCCCAAGGAGCACCTCCGCCCATCGAGTCCTTCTCTTACCGGCCGGAGGATCCCCAGGTTTCGCCGGAGGATGTTTCCGATGGGAGCAGCGATGATTGCGTCGAAATCAAGGAGGACTTAGAGGATGATGACGCGGAGGTTCTGGCGGCGCCGGTGAGTAGAGGTCGGAGGTTTGTGGTGGATGAGGATAGTGATGAGGATTTTGCAGAGGTGGTGGAGGTGAAGTCGGGGACGGAGGAGGAGGCGGAGGAGGAGGTGGAGGAGGATGATGTTGTCGGTAAGGCTTTGCAGAAGTGCGCGAAGATATCGGCGGAGCTCAGGCGAGAGCTTTACGGTTCTTCGGTGACTGCCTGTGACCGCTACGCGGAAGTGGAGTCTTCTTCAGTGAGGATTGTGACTCAGGATGATATTGATGTGGCTTGTGGGGCAGAGGATTCTGATTTTCAGCCTGTTCTCAAACCATACCAACTCGTTGGAGTCAACTTTCTTCTCCTGTTGTATCGGAAGGGTATAGGAGGAGCCATCTTGGCAGATGAGATGGGTCTCGGTAAAACCATTCAGGCTATAACATATTTAACCTTGTTGAAACACATGGACAATGACCCTGGTCCCCATTTAGTTGTGTGTCCTGCTTCTGTTCTCGAAAACTGGGAAAGAGAGCTTAAAAAGTGGTGCCCATCATTCACTGTGATCCAATATCATGGGGCTGGGCGAACGCATTATTCAAAAGAGTTGAACTCTTTGTCAAAAGCGGGATTACCCCCTCCATTTAATGTACTTCTTGTGTGTTACTCGCTTTTTGAACGACACAGTCAACAGCAGAAAGATGACCGTAAACTTCTAAAACGTTGGCAATGGAGCTGCGTGCTCATGGATGAGGCCCATGCTTTGAAGGATAAGAACAGCTATAGGTGGAAAAACCTGATGTCCGTTGCACGAAATGCAAACCAGCGTCTGATGTTGACGGGGACACCACTCCAAAATGATTTGCATGAGCTTTGGTCATTATTGGAGTTTATGATGCCTGATCTTTTTACAACTGGAGATGTGGACTTGAAGAAGTTATTAAATGCAGAAGATAGAGATTTGATTGCTCGTATGAAGTCCATTCTTGGACCATTTATTTTGAGGCGTTTAAAGTCTGATGTAATGCAGCAACTTGTCCCAAAGATACAGCGGGTTGAGTATGTGTACATGGAAAAGAACCAGGAGGATGCTTATAAAGAAGCCATTGAGGAGTACCGTGCAGCTTCACGGGCTCGAATTGCAAAAATTTCTGATGTCAACCGCAACAGTGTTGTTAGAGTTCTTCCTCGGCGTCAGATTTCAAATTATTTTGTTCAGTTCCGAAAGATTGCAAATCATCCTTTACTGGTGAGGCGTATTTACAATGATGAGGATATTGTTCGTTTTGCAAAAAGGTTATATCCGATGGGTGTGTTTGGTTTTGAATGTAACTTGGACAGAGTAATCGAAGAGCTTAAGAGTTACAATGACTTCTCTATTCACCGGCTTTTACTCTATTATGATGTCGCGGATAAAAAGGGCATCCTTCCGGACAAACATGTCATGGTTTCAGCAAAATGTCGGGAATTAGCAGAACTTCTCCCCACACTCAAACAAGGTGGGCACCGGGTTCTAATATTTAGCCAGTGGACATCAATGCTTGACATTCTGGAGTGGACTTTGGATGTAATTGGAGTGACATATAGACGACTTGATGGGAGCACACAGGTGACAGACAGACAGACAATTGTGGACACATTCAATAATGATACTTCTATATTTGCCTGCTTGCTGTCCACAAGAGCTGGAGGGCAGGGTCTGAACTTGACTGGAGCTGATACAGTTGTCATCCATGACATGGATTTCAACCCACAGATTGACCGTCAAGCTGAAGATCGATGTCATCGCATCGGCCAAACGAAACCTGTTACTATATACAGGTTGGTGACCAAAGATACAGTGGATGAGAATGTTTATGAGATTGCAAAGCGGAAGCTAATCTTGGATGCTGCAGTGCTCGAGTCAGGTGTGGAGGTGGATGATGAAGCTGGCATGTCTGAAAAGACTATGGGAGAGATATTATCGGCACTTTTGCTTGGTTAG 2187 46.36 MKRDFTEISDDEWDNHSFKLSRALKKSQGAPPPIESFSYRPEDPQVSPEDVSDGSSDDCVEIKEDLEDDDAEVLAAPVSRGRRFVVDEDSDEDFAEVVEVKSGTEEEAEEEVEEDDVVGKALQKCAKISAELRRELYGSSVTACDRYAEVESSSVRIVTQDDIDVACGAEDSDFQPVLKPYQLVGVNFLLLLYRKGIGGAILADEMGLGKTIQAITYLTLLKHMDNDPGPHLVVCPASVLENWERELKKWCPSFTVIQYHGAGRTHYSKELNSLSKAGLPPPFNVLLVCYSLFERHSQQQKDDRKLLKRWQWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDLFTTGDVDLKKLLNAEDRDLIARMKSILGPFILRRLKSDVMQQLVPKIQRVEYVYMEKNQEDAYKEAIEEYRAASRARIAKISDVNRNSVVRVLPRRQISNYFVQFRKIANHPLLVRRIYNDEDIVRFAKRLYPMGVFGFECNLDRVIEELKSYNDFSIHRLLLYYDVADKKGILPDKHVMVSAKCRELAELLPTLKQGGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTDRQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKDTVDENVYEIAKRKLILDAAVLESGVEVDDEAGMSEKTMGEILSALLLG* 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18955321 18986890 + Vvi1g1106 Vvi1g1106 770306

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1106 728 Gene3D - 148 396 IPR038718 -
Vvi1g1106 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 310 707 IPR027417 -
Vvi1g1106 728 Coils Coil 426 446 - -
Vvi1g1106 728 Pfam SNF2-related domain 198 484 IPR000330 GO:0005524|GO:0140658
Vvi1g1106 728 SMART helicmild6 583 666 IPR001650 -
Vvi1g1106 728 MobiDBLite consensus disorder prediction 23 57 - -
Vvi1g1106 728 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 557 719 IPR001650 -
Vvi1g1106 728 CDD DEXHc_Snf 178 371 - -
Vvi1g1106 728 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 191 369 IPR014001 -
Vvi1g1106 728 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A CONTAINING DEAD/H BOX 1 33 726 - -
Vvi1g1106 728 CDD SF2_C_SNF 544 677 - -
Vvi1g1106 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 404 IPR027417 -
Vvi1g1106 728 SMART ultradead3 174 379 IPR014001 -
Vvi1g1106 728 Gene3D - 415 726 IPR027417 -
Vvi1g1106 728 Pfam Helicase conserved C-terminal domain 554 666 IPR001650 -
Vvi1g1106 728 PANTHER SNF2/RAD54 HELICASE FAMILY 33 726 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1106 K14439 SMARCAD1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [EC:5.6.2.-] - vvi:100252853 1424.45
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1106 . . . . . . . . . . . . Car04g00912 . . . . . . . . . . . . . . . . . . Cone13ag0678 Cone19ag0668 . . . . . . . . . . Bpe11g01720 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010131 0 0 1 0 1 1 2 1 2 2 1 1 1 0 1 1 1 2 1 1 1 1 1 1 1 1 0 3 2 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14464 PF00176 SNF2_N 2.10E-56 CL0023 Vvi TR