Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1107 ATGGGTGGATATATATTGGGGGTTAGGGCGTATGCCTATGGATTGATTGTTTTCTTCTCTCTACATCTCCGGATTGTAGCTGTCCCTCTGGATACTTTCCTCTTGTTTCTTTATGGCTTGTATCTGAAGGTTTTCAGGGTACTAGAGTGGAGATTTGCTTCTGTTGAAGAAGATCACAAAGATAGAGCAAACAACTGCAGCTGCATAAAGAGATTGTTGACGATGGCCGCCCCTTCCTCATCGGCGCCTTTTTTCGGAACGAGGGAAGAAGAACAAACCCAAATGATACAACAACAATCCTCCACACCCACTTCCTCCACAGCTCCAACTGCAGCAGCACCTCAAAAGCGAAAGAGAAATCTTCCAGGAACACCAAATCCAGATGCGGAGGTGATTGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTCATTTGTGAGGTATGCAACAAAGGGTTTCAAAGGGAGCAAAACCTACAGCTACACAGAAGAGGACACAACCTGCCTTGGAAACTAAGGCAGAAGACTACAAAAGAAGTGAGGAGGAAGGTGTACCTATGCCCCGAGCCCACATGCGTCCACCATGATCCTTCTCGAGCTCTTGGCGACCTCACTGGCATCAAAAAGCACTATTCTAGAAAACACGGCGAGAAGAAATGGAAGTGCGATAAGTGCTCCAAGCGATACGCCGTGCAATCCGATTGGAAAGCCCATTCCAAGACCTGTGGTACTAGGGAATATCGATGCGATTGTGGCACTCTCTTCTCAAGGCGCGATAGTTTCATCACTCACCGGGCATTCTGCGATGCACTGGCTCAGGAGAGTGCGAGGAATCCTCCCAGCTTGACCAACATGGGTGGCCATTTATATGGAACCAGCCAAATGACCTTGGGCCTATCTCAAGTGGGCAATGCCAACAACTCTCCTTCTGCTGCTGCCAATCTCTTTAACCTTGGTTTCTTTCCGAATAATAGTACCATCCGGATCAGTTTAACAATGGGAACGCCAGTGGCCAAGGAACAACGCTGTTCTCCAGTAGCATGA 1047 48.04 MGGYILGVRAYAYGLIVFFSLHLRIVAVPLDTFLLFLYGLYLKVFRVLEWRFASVEEDHKDRANNCSCIKRLLTMAAPSSSAPFFGTREEEQTQMIQQQSSTPTSSTAPTAAAPQKRKRNLPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLRQKTTKEVRRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARNPPSLTNMGGHLYGTSQMTLGLSQVGNANNSPSAAANLFNLGFFPNNSTIRISLTMGTPVAKEQRCSPVA* 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19016017 19020560 + Vvi1g1107 Vvi1g1107 770307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1107 348 Pfam Zinc-finger double-stranded RNA-binding 145 167 IPR022755 -
Vvi1g1107 348 SMART c2h2final6 186 216 IPR013087 -
Vvi1g1107 348 SMART c2h2final6 145 167 IPR013087 -
Vvi1g1107 348 SMART c2h2final6 221 241 IPR013087 -
Vvi1g1107 348 Gene3D Classic Zinc Finger 124 191 - -
Vvi1g1107 348 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 75 309 - -
Vvi1g1107 348 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 75 309 - -
Vvi1g1107 348 ProSiteProfiles Zinc finger C2H2 type domain profile. 145 167 IPR013087 -
Vvi1g1107 348 SUPERFAMILY beta-beta-alpha zinc fingers 144 241 IPR036236 -
Vvi1g1107 348 ProSitePatterns Zinc finger C2H2 type domain signature. 147 167 IPR013087 -
Vvi1g1107 348 MobiDBLite consensus disorder prediction 88 129 - -
Vvi1g1107 348 MobiDBLite consensus disorder prediction 88 113 - -
Vvi1g1107 348 Gene3D Classic Zinc Finger 199 278 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g1107 Vvi17g159 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14465 PF12171 zf-C2H2_jaz 1.90E-05 CL0361 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1107 K25870 - vvi:100257993 449.514