Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1108 ATGGCCGCTTCTTCAACGCCTGCGCAGTTGTTTGGAATCAGAGAGGAGGAGCAGAATCAGGTGAAACAACAACATTCCGCCGTGCCATCCTCATCGAACGCCCCAGCTGCAGCCCCCCCGAAGAAGAAGAGAAATCAACCTGGAACTCCAAATGCAGAGGTCATTGCACTCTCTCCAAAGACCCTAATGGCCACAAATAGATTTATATGTGAGGTGTGTAACAAGGGGTTCCAAAGGGAGCAAAACTTACAGCTCCACAGAAGAGGACACAACCTACCCTGGAAGCTTAAGCAGAAGACAACAAAAGAAGTGAGAAGGAAGGTGTATTTGTGTCCGGAACCTGGTTGCGTTCACCATGACCCGGCTCGGGCTCTTGGCGACCTCACTGGTATAAAGAAGCACTACTCAAGGAAGCATGGAGAAAAGAAATGGAAGTGTGAGAAGTGCTCTAAGAGGTATGCCGTTCAATCAGATTGGAAAGCCCATTCCAAGACCTGTGGCACGAGAGAATACAGATGTGATTGTGGTACCCTCTTCTCAAGGCGTGACAGCTTCATTACTCACAGGGCCTTCTGCGATGCGCTCGCGCAGGAAAGTGCAAGACATCCGACGCCAATGAGCACAATTGGCAGTCATCTCTATGGAAGTAGTAACATGGGGTTAGGCTTGTCTCAGGAATTTCATGAAGACCAGCAATCTCAACATGGGGGGTTGTTGACGAACAAGCCATTCCATGGACTGGTTCATCTTCCTGATCTGCAAAACAACACAAACAACCCTTCTTCTGCTGCTAATCTGTTCAATCTCAGCTTCTTTTCCAACAGCAGCAATACCAACAGCATGCTCAGTAACACCAACAATGCCAATAACAGCACTAATATGCCATCTTCAGGGTTTAACATAATCGGGGATCAAATCAGCTCTGGGGTCCCTTCTCTCTTCAGCACATCTCTCCAAAATGAAAATGCAGTTTCGCATATGTCTGCAACTGCATTGCTTCAGAAAGCGGCACAAATGGGATCGACCTCGAGCAACAACAGTGCCTCCTTGCTCCGAGGCTTTGCAGGTTCTTCCTCCGCCAACGCAAAATCTGATAGGCCTCTTGTTGGCCCCAACTTCGGGGGTGTTTTTGGGGAAAACGAAAGCCACCTTCAGGACCTGATGAATTCTCTTGGTGGTGGGAGCTCGTCCATCTTTGGTGGTGGGTCTGGAGGGCTCCACCAGAATCTGACTGCTAATATGGGGGGCTCTGATAGACTAACCAGAGATTTTCTAGGGGTGGGGCAGATGGTTAGAACCATCAGTGGAGGATTTTCACAGAGAGACCTACCACCTCCTGTGATACAAGAAGAGATAACGAGGAAAAAGAAACAACTACAAGTCCAGGAACTCTGGCTGTTCCATGGAAATGCCTTTTTCCTCTTCTTGTGGAGTAGAACTCTCTGGATGGATGATGATGTTTTGACTTGTTGA 1473 48.34 MAASSTPAQLFGIREEEQNQVKQQHSAVPSSSNAPAAAPPKKKRNQPGTPNAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVRRKVYLCPEPGCVHHDPARALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPTPMSTIGSHLYGSSNMGLGLSQEFHEDQQSQHGGLLTNKPFHGLVHLPDLQNNTNNPSSAANLFNLSFFSNSSNTNSMLSNTNNANNSTNMPSSGFNIIGDQISSGVPSLFSTSLQNENAVSHMSATALLQKAAQMGSTSSNNSASLLRGFAGSSSANAKSDRPLVGPNFGGVFGENESHLQDLMNSLGGGSSSIFGGGSGGLHQNLTANMGGSDRLTRDFLGVGQMVRTISGGFSQRDLPPPVIQEEITRKKKQLQVQELWLFHGNAFFLFLWSRTLWMDDDVLTC* 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19042622 19048171 - Vvi1g1108 Vvi1g1108 770308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1108 490 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 442 - -
Vvi1g1108 490 MobiDBLite consensus disorder prediction 1 51 - -
Vvi1g1108 490 Gene3D Classic Zinc Finger 123 201 - -
Vvi1g1108 490 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Vvi1g1108 490 Pfam Zinc-finger double-stranded RNA-binding 68 90 IPR022755 -
Vvi1g1108 490 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 442 - -
Vvi1g1108 490 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Vvi1g1108 490 MobiDBLite consensus disorder prediction 1 33 - -
Vvi1g1108 490 Gene3D Classic Zinc Finger 50 113 - -
Vvi1g1108 490 SMART c2h2final6 109 139 IPR013087 -
Vvi1g1108 490 SMART c2h2final6 144 164 IPR013087 -
Vvi1g1108 490 SMART c2h2final6 68 90 IPR013087 -
Vvi1g1108 490 SUPERFAMILY beta-beta-alpha zinc fingers 67 164 IPR036236 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14466 PF12171 zf-C2H2_jaz 2.90E-05 CL0361 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1108 K25870 - vvi:100251079 716.457