Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g111 ATGGAAGCTTTTGCGACTGGCTACCATAGGAGGTCAGAGCTGAGGAAAGCTCAGCCAGTGAATGGTGATGAGGAGAGTGATGGGGACCATGCAGGCCATGTCCATGGCTCCGCCTTTGTGCTGGAGAGATCCAACTCCTCTGATCTTATCCGGCACCGGGTCGTTTCTCAGGTTTTGGAGTTGGGAATTGTGGTACACTCTGTGATCATTGGCATCTCCTTGGGGGCTTCTGAGAGTCCAAAGACAATCAAACCTTTGGTAGCAGCATTGAGCTTCCACCAGTTTTTTGAGGGGATGGGGCTAGGTGGATGCATCTCTCAGGCAAAGTACAAGATTAAAGCTACCATAATCATGGTTCTGTTCTTCTCCCTCACAACCCCAACTGGGATTGCTGTTGGCCTAGGGATATCGAAAATTTACGACGAAAACAGCCCAACTGCACTTATTGTTCAAGGGGTCCTGAATTCGGCATCAGCTGGGATTTTGATCTACATGGCTCTTGTTGATCTTCTTGCAACTGACTTCATGAACCCCAAAATGCAAAGCAATGTGAGACTCCAACTTGGGGCATATGCTACTCTTCTTTTGGGGGCAGCTTCTATGTCAGTTCTGGCCAAATGGGAAGAACAGAGCAGCAGAACAGGCGCTACCCGATACAAATTGGCTGCCATTTTCTCGATTCTTGCCGCGAGTTTAATTGGGGTGGCGCTCCCAACCTTGGGCAAGAAAATCCCGGCATTGCGCCCGGAAAACGATGTGTTCTTCGCCGTGAAGGCCTTTGCTGCCGGGGTGATTCTGGCGACCGGGTTCATTCACGTGTTGCCGGATGCGTTCGAGTCTCTGACGAGCCCCTGCCTCGGCGAGAGCCCGTGGGGGAGTTTTCCGTTTAGTGGGTTCGTCGCTATGCTTTCGGCGATCGGGACGATGATGATGGATGCTTTTGCCACTGGGTTCTACCAGAGGTTGCAGCGGAGCAAGGCTCAGCCGGTGAAGGAAGACGAGGAAATGCAATGTGAGAATCAGGACCAGGTGCATGGTCATCCACATGGGTCCGGCTTCGTCTCCGGTGAACTGGGATCTCCGGAGCTAGCCCGCCACCGTGTGATAGCTCAGGTTTTGGAGTTGGGGATTGTAGTTCATTCGGTGATTATTGGGATTTCCTTGGGAGCTTCTGAAAGTCCAAAGACAATCAAGCCTCTTGTGGCTGCATTGTCCTTCCATCAGTTCTTTGAAGGCATGGGCCTTGGTGGATGCATTTCCCAGGCAAAATTCAAGTCTAAGGCAGTTGCAGTGATGGTGGTTTTCTTCTCCCTGACCACTCCAGTTGGGATAGCAGTTGGCATGGGGATATCAAATATTTACGACGAAAACAGCCCGAAGGCTCTGGTGGTGGAAGGAGTTTTCAACTCAGCCTCAGCTGGGATATTGATCTACATGGCCCTTGTCGACCTTGTTGCAGCAGACTTCATGAGCCCTAGAATGCAAACCAATTTCAAGCTCCAAATTGCAGCCAATATCTTGCTTCTTCTTGGTACAGCCTGCATGTCCCTCTTGGCCAAATGGGCTTAA 1569 50.99 MEAFATGYHRRSELRKAQPVNGDEESDGDHAGHVHGSAFVLERSNSSDLIRHRVVSQVLELGIVVHSVIIGISLGASESPKTIKPLVAALSFHQFFEGMGLGGCISQAKYKIKATIIMVLFFSLTTPTGIAVGLGISKIYDENSPTALIVQGVLNSASAGILIYMALVDLLATDFMNPKMQSNVRLQLGAYATLLLGAASMSVLAKWEEQSSRTGATRYKLAAIFSILAASLIGVALPTLGKKIPALRPENDVFFAVKAFAAGVILATGFIHVLPDAFESLTSPCLGESPWGSFPFSGFVAMLSAIGTMMMDAFATGFYQRLQRSKAQPVKEDEEMQCENQDQVHGHPHGSGFVSGELGSPELARHRVIAQVLELGIVVHSVIIGISLGASESPKTIKPLVAALSFHQFFEGMGLGGCISQAKFKSKAVAVMVVFFSLTTPVGIAVGMGISNIYDENSPKALVVEGVFNSASAGILIYMALVDLVAADFMSPRMQTNFKLQIAANILLLLGTACMSLLAKWA* 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1086664 1093073 - Vvi1g111 Vvi1g111 769311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g111 522 Pfam ZIP Zinc transporter 219 519 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Vvi1g111 522 Pfam ZIP Zinc transporter 22 205 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Vvi1g111 522 PANTHER ZINC TRANSPORTER 5-LIKE 1 208 - -
Vvi1g111 522 PANTHER ZINC TRANSPORTER 5-LIKE 210 522 - -
Vvi1g111 522 PANTHER ZINC/IRON TRANSPORTER 1 208 - -
Vvi1g111 522 PANTHER ZINC/IRON TRANSPORTER 210 522 - -
Vvi1g111 522 TIGRFAM zip: ZIP zinc/iron transport family 211 522 IPR004698 GO:0005385|GO:0016021|GO:0071577
Vvi1g111 522 TIGRFAM zip: ZIP zinc/iron transport family 4 207 IPR004698 GO:0005385|GO:0016021|GO:0071577
Vvi1g111 522 MobiDBLite consensus disorder prediction 1 31 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g111 K14709 - vvi:100250979 592.423