Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1110 ATGGGCATCATAGCTAACCTTCTTTGCCTTATATCCCACCAAACAAGGAATATTTTCAGGAGAGATTCATTGAAGGTGCATTTACAACAAAGATCCATTGGAAGAGATATTACTCCAGTCCTTGTGGAAACCTTTCTATCTGCGCAGCAACATTTGAAGACTATTGTCCTTGTGGCCAGTGCAGGATATGGCTCAGATCACATTACAGCAATTGATATTCTTAGAACAACAAGATCTGCAAATGGATTAGCTATTGGTGTTATTTTGAAGCCTTTTAGCTTCGAAGGAAAAAGGCGCCAAAATGAGGTCAAGAATTTGGTAGAGAGACTTCAGGAGCATACAAATTTTTGCATCGTGATTGACACTGACACACTACTCAAAAAGGATTTAGTAACCCTAGATGAGGCTCTGAAGACTGCAGATAATGGAGTTCTATTGGCCATAAATGCTATTTCTGTTCTCATATCTGGGATGCACAAAAAGCTTATTGATGCACCACATGATAATATGAAAGAACTCAAGGGTCCGGAAATTATAAAAATTTTAGAAAGCCACAAAGAAGCAAAAATCGGATTTGGGGCTGGCTACAACATTGAAACTTCAATTTTACAAGCTATATATGACTGCCCTTTCCTTAGTGTGTGTTTAAAGGATTTAAATGGCACAGTTATATGCATTCTTGCAAGTTCAGTCATCATCAACAACAGTGATGTGCTTTCCTTTTTGCATGTTTTCCGGAAAACTACAGAATGCACGAGAGAGATCATAATATCTATAATTCATGAGCCCAATCTTGAGCCCAACCTGATAGTGACAACAGTTATTATTTTAGGTTCTACTGGGCAACCGGCATCTCAAAAAAGCAGCATATTGTCCCAACTGGCCCAGCATTTCCCTTTTATTTTTAATCTTTTGGGAGGACACCATCTGCAACCAAATGGCACACAAGAAAGCCCTTCTATTGAAGGCCCAGGTCTTCCTAAGTTGATAAATGCACACGACTCTGGTGAAATGCAAACTGGAATTCCTATGGATGGCATTGCTGATGATATGGATATGTACTCTGAAGAACTCCAGATGTTGTTGGGCAGAAATGACCATGAAATCAATGCTTCAAGGGATAGTAATGGAAGATATGAACAAAGTGAGCTTGGATGCTCAGAGGCCACTATCGATTCCCTCAACTTTAATGATCAAAATACTGAAGGGATATCTGCTTTCCAAAGAGAGCCGCTTATTGGCTGGAACTTGGGACCAGGAGATCAGATTGCACAGGAGTGGGCTAAAGAAAGGGCAGCTGATTCTGGAGCTACTACAACGCTTGACAACCTAAGCATCTTCCACCTTCCAGTGGGTGTGAGACCTTTAGAAGAGTTGAATGACAGTCCAAATATCTCAAATACCACACAACACCCAGAGACAAAAATAGGGGATGAGATTAAGGCACAACCACTGGTTACTTCAAGGATGCCTTGGGATGAATTAACTGGTGCAGGTTTTGAAGCAGTAATGGATCTATACAATTCTGCATCTACAGTACTAAAGGGAAAATATGCAGATATTCCCAAAAAGCAAGGCATGCTTTCTGTTCGTGCTGCATCTATGCTGGAATCTGAACGAGATTCACAAAAAAAGTGGAGCCCCATTGTGCAAATGCAGTACAGAGGAGGAATCTACCAGGGGCGTTGCCAAGGGGGTCTTCCTGAAGGAAAGGGTCGTCTTTCACTTAGGGATGGAAGCATATATGATGGCATGTGGCGCTATGGTAAGAGATCAGGTCCAGGAACACTCTACTTCTGTAACGGGGATGTGTTCCAAGGATCATGGAGGGACGACGTTATGCATGGAAAGGGTTGGTTTTATTTTCACAGTGGAGATAGGTGGTTTGCAAACTTTTGGAAGGGAAAGGCAAATGGTGAAGGGCGCTTCTATTCAAAGTTTGGCGATGTCTTCTTCGGCCATTTTAAAGATGGATGGAGACATGGCCACTTCCTGTGTATCAATGTTAATGGAGAAAGGTGCGTTGAGGTTTGGGATGAAGGTGTCCTTGTAAGTCGCGAACAGCTGGACTCGGATACTGGCACTGGATGA 2091 42.13 MGIIANLLCLISHQTRNIFRRDSLKVHLQQRSIGRDITPVLVETFLSAQQHLKTIVLVASAGYGSDHITAIDILRTTRSANGLAIGVILKPFSFEGKRRQNEVKNLVERLQEHTNFCIVIDTDTLLKKDLVTLDEALKTADNGVLLAINAISVLISGMHKKLIDAPHDNMKELKGPEIIKILESHKEAKIGFGAGYNIETSILQAIYDCPFLSVCLKDLNGTVICILASSVIINNSDVLSFLHVFRKTTECTREIIISIIHEPNLEPNLIVTTVIILGSTGQPASQKSSILSQLAQHFPFIFNLLGGHHLQPNGTQESPSIEGPGLPKLINAHDSGEMQTGIPMDGIADDMDMYSEELQMLLGRNDHEINASRDSNGRYEQSELGCSEATIDSLNFNDQNTEGISAFQREPLIGWNLGPGDQIAQEWAKERAADSGATTTLDNLSIFHLPVGVRPLEELNDSPNISNTTQHPETKIGDEIKAQPLVTSRMPWDELTGAGFEAVMDLYNSASTVLKGKYADIPKKQGMLSVRAASMLESERDSQKKWSPIVQMQYRGGIYQGRCQGGLPEGKGRLSLRDGSIYDGMWRYGKRSGPGTLYFCNGDVFQGSWRDDVMHGKGWFYFHSGDRWFANFWKGKANGEGRFYSKFGDVFFGHFKDGWRHGHFLCINVNGERCVEVWDEGVLVSREQLDSDTGTG* 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19097141 19129029 + Vvi1g1110 Vvi1g1110 770310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1110 696 SMART morn 649 670 IPR003409 -
Vvi1g1110 696 SMART morn 603 624 IPR003409 -
Vvi1g1110 696 SMART morn 580 601 IPR003409 -
Vvi1g1110 696 SMART morn 557 578 IPR003409 -
Vvi1g1110 696 PANTHER PROTEIN ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 18 692 IPR045013 GO:0010020
Vvi1g1110 696 SUPERFAMILY Tubulin nucleotide-binding domain-like 31 155 IPR036525 -
Vvi1g1110 696 Gene3D Tubulin/FtsZ, GTPase domain 24 278 IPR036525 -
Vvi1g1110 696 PRINTS Cell division protein FtsZ signature 82 103 IPR003008 GO:0005525
Vvi1g1110 696 PRINTS Cell division protein FtsZ signature 176 197 IPR003008 GO:0005525
Vvi1g1110 696 Pfam MORN repeat 605 627 IPR003409 -
Vvi1g1110 696 Pfam MORN repeat 559 580 IPR003409 -
Vvi1g1110 696 Pfam MORN repeat 582 604 IPR003409 -
Vvi1g1110 696 Gene3D - 561 610 - -
Vvi1g1110 696 Gene3D - 611 693 - -
Vvi1g1110 696 PANTHER - 18 692 - -
Vvi1g1110 696 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 556 684 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1110 - - vvi:100264763 1373.99