Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1113 ATGCCCTGTATGAGAAGTTGTTTGAGCTTGATGACATGTTGGGAGGCAAGCAAATATGATGATGCAGACTACAGGGATTATAATGGAGTTGTTATCATCCCTCTAGTTATGGGTTTGCTCCCTGCAAACTGTCATGTAAATGGCATTGGAACTCACTCACCATGGCCAATTTCTGCTTTCATGGGTAGGAAGTTAATTGGCCTCCATGACAAGCAGAAGATTTTACCCACCAAATTTTTCTGTGGCCTTGGAGGTAAAATAAGGGCTTTTGCAAGTCGCAACTCTGTGAAGAAATTGAGAAAAGACAGACAAGCACGTAAAAATTTAACTTTACAAACTAATAAGATTGCACCCAATGAAGATAATGGGCTGGAAGATAGGTTTCCATCAGAAGATGATAGTGTTCCAGATAACAAGAAGGTGTCCCCTATTGATAATTTGGCTGCACAAGGCTCAATCACCATCCCTTCCAGGGGTGCTGTGCTTCAGGCTTGCACTGTCACTTCTGGGTTGATAGCTGCTTTGGGTATAATCATTCGACAGGTGTCTCATACTGCATCAATTGAAGGATTGCCAATTCTTGATTGCTCTATGGAAGTATCATTTGGCTTTGAGATGTGGCATCTTGAGTTAATAGCAGGATTGGTTATAATGGTATCATCATGCCGATTCTTACTACTGAAAACATGGCCAGATTTTGCTGAGTCTAGTGAAGCAGCTAATCAGCAGGTCCTTTCTTCACTACAACCTTTGGATTACATGGTTGTAGCATTTCTTCCAGGGATTAGTGAGGAGCTCCTTTTCCGTGGTGCATTGCTACCACTTTTTGGAGTTAATTGGAAGAGCGTATTTGTGGTTGCTGCCATTTTTGGTGTTCTTCACTTGGGCGGTGGCAGAAAATATTCTTTTGCAATCTGGGCAACATTTGTCGGGGTTTTGTATGGCTATGCAACAATTGCATCCTCAAACCTCATTGTGCCAATGGCTTCTCATGCCATCAACAATCTGATAGGAGGGATATCATGGCGGTACACATCAAAATCATTGGAATAG 1053 42.17 MPCMRSCLSLMTCWEASKYDDADYRDYNGVVIIPLVMGLLPANCHVNGIGTHSPWPISAFMGRKLIGLHDKQKILPTKFFCGLGGKIRAFASRNSVKKLRKDRQARKNLTLQTNKIAPNEDNGLEDRFPSEDDSVPDNKKVSPIDNLAAQGSITIPSRGAVLQACTVTSGLIAALGIIIRQVSHTASIEGLPILDCSMEVSFGFEMWHLELIAGLVIMVSSCRFLLLKTWPDFAESSEAANQQVLSSLQPLDYMVVAFLPGISEELLFRGALLPLFGVNWKSVFVVAAIFGVLHLGGGRKYSFAIWATFVGVLYGYATIASSNLIVPMASHAINNLIGGISWRYTSKSLE* 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19156178 19163419 - Vvi1g1113 Vvi1g1113 770313

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1113 350 PANTHER CAAX AMINO TERMINAL PROTEASE FAMILY PROTEIN 76 346 - -
Vvi1g1113 350 PANTHER CAAX AMINO TERMINAL PROTEASE 76 346 - -
Vvi1g1113 350 MobiDBLite consensus disorder prediction 120 138 - -
Vvi1g1113 350 MobiDBLite consensus disorder prediction 115 138 - -
Vvi1g1113 350 Pfam Type II CAAX prenyl endopeptidase Rce1-like 252 337 IPR003675 GO:0004222|GO:0016020|GO:0071586
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1113 K07052 K07052; CAAX protease family protein - vvi:100252714 632.869
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1113 . Blo16g01181 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0713 . . . . . . . . . . . . Bma06g00586 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008906 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 2 1 33