Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1115 ATGAATCACCTAGCATGTAAGGGTCAGCTGGAGAATTCACTCTTCTGGGTTGGTGAGCTGGGCATGTATGACTATTCTCGTACTTATGGATCTTCTGTTTCCATCAAGTGGCTCATAGATTTATCAGTTAGTAGTACCTGCAGGCTTGTGAAGGCATTGTTGGACAGGGGTGCAAAGTACATTGTGGTTCAAAGCCTTCCACCGACTGGGTGCCTCCCCTTTGACATTTCATTATCCCCAGTAAGTGATCACGATAATCTTGGGTGTGCTGATACTGCAAACACGGTCACACAAACCCACAATGAACTCCTTCAGGCCAAGTTGGCAGAACAACAGAAGCAGTACCCTGACAGCATTATTGCATATGCTGATATTTGGAATGCATACTACACGGTACTGAAAAATCCCAGTCAGTTCGGATTTTCAGAGCCTTTCAAGGCATGCTGTGGATGTGGGAAAGGAGACCTCAACTTTGACTTGCGTTCGTTGTGTGGTGCACGCAACACAAGAGTCTGCAGTGACCCCAGCAAGCACATCACCTGGGATGGGGTTCACCTCACAGAAGCCATGCATCATGTTTTAGCTGATCTCTTGTTAAATAAAGGTTACTGTAAACCATCATTCGATCAGCTAGTTAAGAAGAAAAGAAGTTGCACAGCTAACTAG 666 45.5 MNHLACKGQLENSLFWVGELGMYDYSRTYGSSVSIKWLIDLSVSSTCRLVKALLDRGAKYIVVQSLPPTGCLPFDISLSPVSDHDNLGCADTANTVTQTHNELLQAKLAEQQKQYPDSIIAYADIWNAYYTVLKNPSQFGFSEPFKACCGCGKGDLNFDLRSLCGARNTRVCSDPSKHITWDGVHLTEAMHHVLADLLLNKGYCKPSFDQLVKKKRSCTAN* 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19178778 19180228 + Vvi1g1115 Vvi1g1115 770315

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1115 221 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 5 217 - -
Vvi1g1115 221 SUPERFAMILY SGNH hydrolase 19 200 - -
Vvi1g1115 221 Gene3D SGNH hydrolase 1 202 IPR036514 -
Vvi1g1115 221 Pfam GDSL-like Lipase/Acylhydrolase 39 197 IPR001087 GO:0016788
Vvi1g1115 221 PANTHER SERINE-RICH ADHESIN FOR PLATELETS-LIKE ISOFORM X1 5 217 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1115 - - - vvi:100263223 461.07
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1115 Vvi17g899 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1115 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1083 Cone19ag1071 . . . . . Cme10g00583 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0069075 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1