Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1116 ATGGAGGTGGTGCATTATCAGCTTGCTAGGTGTTCTTACCAAGATTCTATTAAGGTTCTGGAGGCTGATGTACAGCATGCCAATGCTTTGGCTGCTGCAATTCCAAGAGGGAAGGGTGGTGCTCGACTTCAAATGAAATTAGCGTACAATCCCTTGGCGCCAGTCTTTTTGTTTTTGCTCCAGTGGATGGATTGTTCATGCACGTGCCTACTCCCCAAGTATCTCGATCTCTTCCACATACTCATTTACAAGGTATACACAGATGGGAGGCCGAATATATCTGCACATGGAAGGAAGGCAACTATTAGGGACTTCTATGCTGTCATATTACCTTCTCTTCAACGTATCCATGGTAACATAATGGAGCTGGATAATGATGAAGATGGCCATCCTGAAATAGAGATGTACGGCAAGAAAAGAACAGAAGAAGATGGCAGGCTTTCCAATATGGATTTGAAAAGGGAAGATGAATGTGGAATTTGTTTGGAGCCTTGCACCAAAATGGTCTTGCCTAATTGCTGTCATGCAATGTGCATCAACTGCTACCGTGACTGGAACACAAGATCAGAGTCCTGCCCCTTTTGTCGTGGCAGCATAAAGAGAGTTAATTCAGAAGACTTATGGGTTCTCACTTGTGGTGACGATGTGGTCAACACAGAAACAGTTTGCAGGGAAGATTTATTGCGCTTCTACCTCTATATCCACCACCTCCCAAAACACTACCCGGATGCTCTTTTCTTAGTGTATTATGAATACTTAATATGA 765 43.53 MEVVHYQLARCSYQDSIKVLEADVQHANALAAAIPRGKGGARLQMKLAYNPLAPVFLFLLQWMDCSCTCLLPKYLDLFHILIYKVYTDGRPNISAHGRKATIRDFYAVILPSLQRIHGNIMELDNDEDGHPEIEMYGKKRTEEDGRLSNMDLKREDECGICLEPCTKMVLPNCCHAMCINCYRDWNTRSESCPFCRGSIKRVNSEDLWVLTCGDDVVNTETVCREDLLRFYLYIHHLPKHYPDALFLVYYEYLI* 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19181575 19184139 - Vvi1g1116 Vvi1g1116 770316

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1116 254 SUPERFAMILY RING/U-box 150 201 - -
Vvi1g1116 254 SMART ring_2 158 195 IPR001841 -
Vvi1g1116 254 Pfam Zinc finger, C3HC4 type (RING finger) 155 202 - -
Vvi1g1116 254 ProSiteProfiles Zinc finger RING-type profile. 158 196 IPR001841 -
Vvi1g1116 254 ProSitePatterns Zinc finger RING-type signature. 173 182 IPR017907 -
Vvi1g1116 254 PANTHER RING FINGER PROTEIN 41, 151 7 254 - -
Vvi1g1116 254 PANTHER F21J9.10 7 254 - -
Vvi1g1116 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 207 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1116 - - - vvi:100240870 542.347
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1116 Vvi17g900 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1116 . . . . . Bpe10g00772 Bma14g01876 . . Cmo18g00712 . Cma18g00725 . Car18g00672 . Cpe09g00564 Cpe01g01588 Bhi07g01852 . . . . . . . . . . . . . . . . . Lsi04g00641 . . Cme10g00618 . . . . . . . . . . . . . Car04g01817 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001225 3 4 0 0 3 1 3 3 3 3 1 2 2 2 3 2 1 2 4 2 3 3 3 3 3 2 3 4 6 2 76