Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1117 ATGGGCTTATTCTCCCATTTCTTGGTCTCTTTTCTATGCTTAATAACAACTACTCTCTGCCAAGTTACAGAGTTCATCAGTATAGACTGTGGAGGCACAAGCAATTACACTGATTCAAGGACAGGGCTGCAGTGGATTTCAGACACTGGGGCCATTAGCTATGGAAAATCAGTACAAGTTGAGAATCCATATGGGGGCTGGCTTCAGTATCAGCAACGCAGAGACTTCCCCACAGAAAGCAAGTATTGTTACACTCTGAAAACAGAAGAGAGAAGAAGGTACCTAGTCAGGGCCACATTTCAGTATGGAAGCTTGGAAAGTGAAGGCACATACCCGAAATTTCAGCTCTACTTGGATGCAACCAAGTGGGCAACTGTCACAGTTTTGGAATCAGCGAGAGTATATGTGAAGGAAATGATCATCAGGGCACCCTCGAGCTCCATAGACGTTTGTCTCTGCTGTGCTACTACTGGTTCTCCATTCATATCTACTCTTGAGTTGAGACCTCTCAACCTTTCAATGTATGCCACCGATTTTGAAGATGGTTTCTTCTTGAAAGTTTCAGCTAGAGTGAACTTTGGTGCTCCAAGTGAGGACCCCATAAGGTACCCTGATGATCCATATGACAGAATATGGGAATCTGATCTTGTGAAAAGGCAAAATTATCTTGTGGGGGTGGCTCCAGGCACAGAAAGAGTCAATACATCAAAGCAGATAGACGTAAGAACAAGAGAGTACCCACCTGTTAAAGTAATGCAAACTGCAGTTGTTGGCACAAGAGGAAGGCTCAGCTACAGGTTGAACCTGGAAGATTTCCCAGCCAACGCTCGGGCTTATGCATTTTTTGCTGAAATTGAAGAGTTGGGAGTGAATGAAACACGGAAATTCAGAATGGAGCGACCTTATTTGCCTGACTATAGCAATGCAGTGGTAAATATTGCTGAGAATGCCAATGGGAGCTACTCTCTTTATGAGCCTAGTTACATGAATGTTACTATGGATTTTGTTCTATCATTCTCTTTTGTAAAGACCCGAGACTCTACGCGAGGGCCACTCTTAAGTGCAATTGAGATAAGTAAATATGTGCAGATTGCCCCAAAGACGGACAAGGGAGATGTGACTGTTCTGAATGCCCTTTGCGCCATGTCTACTGAAAGTGCTTGGTCGAATGAAGGACGTGATCCATGTGTTCCAGCTCACTGGTCATGGGTGGCTTGCAGCCCAACAACCACACCAAGAATTACAAAAATTACTTTATCTGGAAAGAATCTGAATGGTGTAATTCCATCTGAGCTTAAGAACATGGAGGGATTGACGGAGTTGTGGCTGGATGGAAATTACCTCACAGGGCCAATCCCAGACATGAGTAATCTTATCAGTCTGAAAATTGTGCATCTAGAGAACAACAGACTGACTGGTCCATTGCCTTCTTACCTTGGTAGTTTGCCAAGCTTACAAGAACTGCATGTGCAGAACAACCTTCTTAGTGGAGAAATACCCCCAGCATTGTTAACCGGAAAAGTAATTTTCAACTATGAAGGTAATAGCAAACTACACAAAGAGGCACACAAGACACACTTTAAGTTGATACTTGGAGCTTCAGTTGGACTGCTTGCACTTCTCTTAGTTCTTTGCATAGGAAGTTTATTCCTATTGTGCAATACTCGAAGAAAGGAATCGCAAAGCAAGAGAAGTTCTTTGCGTACGAGCACGAAGGCTTCTACTTCTTACTCAATTGCAAGAGGTGGAAATCTAATGGATGAAGGAGTAGCTTGCTACATTTCACTCTCTGACCTAGAGGAAGCTACTAAAAATTTTGCAAAGCAAATTGGCAGAGGAAGCTTTGGACCTGTCTACTATGGGAAGATGCCAGATGGAAAAGAGATTGCAGTTAAGATCATGGCTGATTCATCCAGCCATGGAACCCAGCAGTTTGTAACTGAGGTTGCCCTTTTGTCAAGAATTCATCATAGGAACTTGGTTCCTCTCATTGGATACTGTGAGGACGAACACCAACATCTTCTGGTTTATGAGTACATGCACAATGGAACCCTGCGCAATCACATACATGATTCTACAAACCAGAAGTGTTTAGACTGGCTTGGTCGTCTTTATGTTGCAGAAGATGCAGCTAAAGGTCTTGAGTACTTACACACTGGATGCAACCCCAGTATCATTCACAGAGATGTAAAGACAAGCAATATTCTATTAGACATTAATATGAGGGCAAAAGTATCAGATTTTGGACTTTCAAGGCAAGCTGAAGAAGATTTAACTCATGTATCAAGTGTCGCACGAGGGACTGTAGGCTACCTTGATCCTGAGTACTATGCAAATCAACAGCTGACAGAAAAGAGTGATGTTTACAGTTTTGGAATCGTCCTGCTTGAACTGATATCTGGAAGAAAGCCAGTTTCACCAGAAGATTATGGTGCTGAATGGAACATTGTTCATTGGGCAAGGTCATTAATTTGTAACGGAGATGTGATCAGTATAGTGGATCCATTTCTACTAGGAAATGTCAAAATTGAGTCCATTTGGAGGATTGCTGAGATTGCAATACTATGTGTAGAACAACATGGAACTTCCAGGCCTAAAATGCAGGAAATAATTTTAGCTATTCAAGATGCCATCAAGATTGAAAGGGGGAATGAAGGTGACCACAAAGCATGTTCTGGTAGTTCAAAAGGACAATCTTCGCGCAAAACATTACTAACAAACTTCCTTGACATCGAAAGCCCTGACTTATCAAATGATTGCCTAGTCCCTTCTGCAAGATAA 2781 42.39 MGLFSHFLVSFLCLITTTLCQVTEFISIDCGGTSNYTDSRTGLQWISDTGAISYGKSVQVENPYGGWLQYQQRRDFPTESKYCYTLKTEERRRYLVRATFQYGSLESEGTYPKFQLYLDATKWATVTVLESARVYVKEMIIRAPSSSIDVCLCCATTGSPFISTLELRPLNLSMYATDFEDGFFLKVSARVNFGAPSEDPIRYPDDPYDRIWESDLVKRQNYLVGVAPGTERVNTSKQIDVRTREYPPVKVMQTAVVGTRGRLSYRLNLEDFPANARAYAFFAEIEELGVNETRKFRMERPYLPDYSNAVVNIAENANGSYSLYEPSYMNVTMDFVLSFSFVKTRDSTRGPLLSAIEISKYVQIAPKTDKGDVTVLNALCAMSTESAWSNEGRDPCVPAHWSWVACSPTTTPRITKITLSGKNLNGVIPSELKNMEGLTELWLDGNYLTGPIPDMSNLISLKIVHLENNRLTGPLPSYLGSLPSLQELHVQNNLLSGEIPPALLTGKVIFNYEGNSKLHKEAHKTHFKLILGASVGLLALLLVLCIGSLFLLCNTRRKESQSKRSSLRTSTKASTSYSIARGGNLMDEGVACYISLSDLEEATKNFAKQIGRGSFGPVYYGKMPDGKEIAVKIMADSSSHGTQQFVTEVALLSRIHHRNLVPLIGYCEDEHQHLLVYEYMHNGTLRNHIHDSTNQKCLDWLGRLYVAEDAAKGLEYLHTGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQAEEDLTHVSSVARGTVGYLDPEYYANQQLTEKSDVYSFGIVLLELISGRKPVSPEDYGAEWNIVHWARSLICNGDVISIVDPFLLGNVKIESIWRIAEIAILCVEQHGTSRPKMQEIILAIQDAIKIERGNEGDHKACSGSSKGQSSRKTLLTNFLDIESPDLSNDCLVPSAR* 927
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19185328 19190687 - Vvi1g1117 Vvi1g1117 770317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1117 926 PANTHER - 15 909 - -
Vvi1g1117 926 SUPERFAMILY L domain-like 398 503 - -
Vvi1g1117 926 Gene3D Phosphorylase Kinase; domain 1 566 679 - -
Vvi1g1117 926 Pfam Protein tyrosine and serine/threonine kinase 606 870 IPR001245 GO:0004672|GO:0006468
Vvi1g1117 926 ProSitePatterns Serine/Threonine protein kinases active-site signature. 725 737 IPR008271 GO:0004672|GO:0006468
Vvi1g1117 926 PANTHER OS07G0107800 PROTEIN-RELATED 15 909 - -
Vvi1g1117 926 ProSiteProfiles Protein kinase domain profile. 604 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1117 926 Gene3D Transferase(Phosphotransferase) domain 1 680 894 - -
Vvi1g1117 926 SMART serkin_6 604 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1117 926 Gene3D Ribonuclease Inhibitor 377 523 IPR032675 -
Vvi1g1117 926 SUPERFAMILY Protein kinase-like (PK-like) 591 871 IPR011009 -
Vvi1g1117 926 Pfam Malectin-like domain 28 360 IPR024788 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g1117 Vvi17g141 ECH
Vvi1g1117 Vvi14g1200 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76486 PF12819 Malectin_like 5.20E-87 CL0202 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1117 - - vvi:100240962 1818.9