Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi1g1119 | ATGGACAGTGCCTTTTGCCCGCCTCGGACCGACGTCTTTCCGGCTGGTCTTCGAGTTCTCGTGGTCGATGACGACCCCACTTGGTTGAAAATCCTTGAAAAGATGCTCAAGAAGTGCTTGTATGAAGTGACCATTTGTGGTTTGGCAAGGGATGCTTTGAACTTGCTTCGGGAAAGAAAAGATGGATATGACATTGTAATCAGTGATGTTAACATGCCTGACATGGATGGTTTTAAACTTCTTGAGCTTGTTGGGCTTGAGATGGATCTTCCAGTAATTATGATGTCTGTTGACGGCGAAACAAGCAGGGTAATGAAAGGTGTTCAGCATGGTGCATGCGATTATCTTCTTAAGCCTATAAGAATGAAGGAACTCCGAAACATATGGCAACATGTTTTCAGAAAGAAGATCAATGAGGTGAGAGACATTGAAAGTCATGAAAGCATTGATGATTTTCAAATTATGAGAAATGGACCAGAACAGTCTGATGATGGGTACTTGGTAAGTGGTGATCCTACTTCAGTGAAGAAAAGAAAAGATACTGAGAACAAGCATGACGACAGAGACCATTGTGACCCTAGTTCTGTGAAGAAAGCTAGAGTTGTTTGGTCAGTTGATCTTCATCAAAAGTTTGTCAGAGCGGTGAATCAGATTGGGTTTGATAAGGTTGGTCCAAAGAAAATATTGGACTTGATGAATGTGCCATGGCTTACTCGAGAAAATGTGGCTAGCCACTTGCAGAAATACCGCCTCTACTTGAGCAGACTTCAAAAGGAAGATGATCTAAAAACATCTTGTGGTGGAATAAAGCATTCTGATCTATCACCAAAAGATTCTACTGGAAGCTTTGGCCTTTCGAACTTGACCAACATGCACCAAAATGATGCTGCTAATAGCGGTTATGGATTTTCTGGAAATAAGAAACTTGTGCAGAGTATTGATATTGATCCAAAAGTACAGGAAGGTGACCTGAAGGGGATAATCTCATTGCCAAGGACAGAGCAGAAAAAAATGTTGACTGGTGAAGCTTCTGATCCTCAGAAGGCCAGAAGTTCACAGATGGGTTTCAATGATTCTTTCGGGTCAATAGAGCAAGATGTAAACTATGCAGCATTTGATTCAAGTATCTCAGCACAATACTCTTGGAGTGGAGAAAAAGTTCCTGAAGCTCAGTTTCAGGAAGAACATAGACCAAGTGTTCAGTTGGAGACTAGCTTTAACCAGTTGCCTGTGCCTGGTCCGCAGCATCATATTCAAGTTGATTGCCTGCAGCCTACTTTGCCACCCATCAGTCCTGGATCTTCCAGAAAAGAAAGAGATAAAGCAAGTCCTGCCAAAATCAAGCCCTTGTATGCCAGTTACGATAGCCATCATGTCAGCAATGTAAGTTCAGCAGGAAGTGAAATTGACCTGTTTTCTGTTCAATCAAAGTGCCAAATGGTAAACCCTCAAGCTTTTGAGCCTATTTCAAACATTACACTGAATATGAGAAACCAGGGCCACAACCAGAGTGGTGTGAATGATTTGGAATCCTTTCAAAGGAACCTGATTTCAGGGAGTGGGTCAGCTCTTGAATCATTAGAGGACTTGCAAGTTCATTGGCTCCAAGGTGACTGTAATCCAATGAATCTTGGACTCCGAAACATTGAATTTTCAGATTACCATGACCAGAAGCTTATTACTGAAGTTCCCTTCCACTTGTATGATCCACTTAAGTTAGACTATGAGTATCTCTCTGACTTGACAGAATATCCTATAATGGATCAAGGTCTATTCATAGCATGA | 1785 | 41.68 | MDSAFCPPRTDVFPAGLRVLVVDDDPTWLKILEKMLKKCLYEVTICGLARDALNLLRERKDGYDIVISDVNMPDMDGFKLLELVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKINEVRDIESHESIDDFQIMRNGPEQSDDGYLVSGDPTSVKKRKDTENKHDDRDHCDPSSVKKARVVWSVDLHQKFVRAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKEDDLKTSCGGIKHSDLSPKDSTGSFGLSNLTNMHQNDAANSGYGFSGNKKLVQSIDIDPKVQEGDLKGIISLPRTEQKKMLTGEASDPQKARSSQMGFNDSFGSIEQDVNYAAFDSSISAQYSWSGEKVPEAQFQEEHRPSVQLETSFNQLPVPGPQHHIQVDCLQPTLPPISPGSSRKERDKASPAKIKPLYASYDSHHVSNVSSAGSEIDLFSVQSKCQMVNPQAFEPISNITLNMRNQGHNQSGVNDLESFQRNLISGSGSALESLEDLQVHWLQGDCNPMNLGLRNIEFSDYHDQKLITEVPFHLYDPLKLDYEYLSDLTEYPIMDQGLFIA* | 595 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 19206464 | 19214664 | + | Vvi1g1119 | Vvi1g1119 | 770319 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi1g1119 | 594 | CDD | REC_typeB_ARR-like | 19 | 133 | - | - | |
Vvi1g1119 | 594 | Gene3D | - | 17 | 165 | - | - | |
Vvi1g1119 | 594 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 6 | 558 | IPR045279 | GO:0009736 | |
Vvi1g1119 | 594 | SUPERFAMILY | Homeodomain-like | 196 | 255 | IPR009057 | - | |
Vvi1g1119 | 594 | PIRSF | RR_ARR_type-B | 2 | 563 | IPR017053 | GO:0003677|GO:0003700|GO:0009736 | |
Vvi1g1119 | 594 | MobiDBLite | consensus disorder prediction | 155 | 193 | - | - | |
Vvi1g1119 | 594 | SMART | REC_2 | 17 | 129 | IPR001789 | GO:0000160 | |
Vvi1g1119 | 594 | Pfam | Response regulator receiver domain | 19 | 128 | IPR001789 | GO:0000160 | |
Vvi1g1119 | 594 | SUPERFAMILY | CheY-like | 16 | 137 | IPR011006 | - | |
Vvi1g1119 | 594 | MobiDBLite | consensus disorder prediction | 173 | 193 | - | - | |
Vvi1g1119 | 594 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 6 | 558 | - | - | |
Vvi1g1119 | 594 | ProSiteProfiles | Response regulatory domain profile. | 18 | 133 | IPR001789 | GO:0000160 | |
Vvi1g1119 | 594 | MobiDBLite | consensus disorder prediction | 425 | 444 | - | - | |
Vvi1g1119 | 594 | Pfam | Myb-like DNA-binding domain | 200 | 250 | IPR001005 | - | |
Vvi1g1119 | 594 | Gene3D | - | 195 | 257 | - | - | |
Vvi1g1119 | 594 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 198 | 251 | IPR006447 | GO:0003677 |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14467 | PF00072 | Response_reg | 4.40E-23 | CL0304 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi1g1119 | - | K14491 | vvi:100246057 | 1207.97 |