Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1119 ATGGACAGTGCCTTTTGCCCGCCTCGGACCGACGTCTTTCCGGCTGGTCTTCGAGTTCTCGTGGTCGATGACGACCCCACTTGGTTGAAAATCCTTGAAAAGATGCTCAAGAAGTGCTTGTATGAAGTGACCATTTGTGGTTTGGCAAGGGATGCTTTGAACTTGCTTCGGGAAAGAAAAGATGGATATGACATTGTAATCAGTGATGTTAACATGCCTGACATGGATGGTTTTAAACTTCTTGAGCTTGTTGGGCTTGAGATGGATCTTCCAGTAATTATGATGTCTGTTGACGGCGAAACAAGCAGGGTAATGAAAGGTGTTCAGCATGGTGCATGCGATTATCTTCTTAAGCCTATAAGAATGAAGGAACTCCGAAACATATGGCAACATGTTTTCAGAAAGAAGATCAATGAGGTGAGAGACATTGAAAGTCATGAAAGCATTGATGATTTTCAAATTATGAGAAATGGACCAGAACAGTCTGATGATGGGTACTTGGTAAGTGGTGATCCTACTTCAGTGAAGAAAAGAAAAGATACTGAGAACAAGCATGACGACAGAGACCATTGTGACCCTAGTTCTGTGAAGAAAGCTAGAGTTGTTTGGTCAGTTGATCTTCATCAAAAGTTTGTCAGAGCGGTGAATCAGATTGGGTTTGATAAGGTTGGTCCAAAGAAAATATTGGACTTGATGAATGTGCCATGGCTTACTCGAGAAAATGTGGCTAGCCACTTGCAGAAATACCGCCTCTACTTGAGCAGACTTCAAAAGGAAGATGATCTAAAAACATCTTGTGGTGGAATAAAGCATTCTGATCTATCACCAAAAGATTCTACTGGAAGCTTTGGCCTTTCGAACTTGACCAACATGCACCAAAATGATGCTGCTAATAGCGGTTATGGATTTTCTGGAAATAAGAAACTTGTGCAGAGTATTGATATTGATCCAAAAGTACAGGAAGGTGACCTGAAGGGGATAATCTCATTGCCAAGGACAGAGCAGAAAAAAATGTTGACTGGTGAAGCTTCTGATCCTCAGAAGGCCAGAAGTTCACAGATGGGTTTCAATGATTCTTTCGGGTCAATAGAGCAAGATGTAAACTATGCAGCATTTGATTCAAGTATCTCAGCACAATACTCTTGGAGTGGAGAAAAAGTTCCTGAAGCTCAGTTTCAGGAAGAACATAGACCAAGTGTTCAGTTGGAGACTAGCTTTAACCAGTTGCCTGTGCCTGGTCCGCAGCATCATATTCAAGTTGATTGCCTGCAGCCTACTTTGCCACCCATCAGTCCTGGATCTTCCAGAAAAGAAAGAGATAAAGCAAGTCCTGCCAAAATCAAGCCCTTGTATGCCAGTTACGATAGCCATCATGTCAGCAATGTAAGTTCAGCAGGAAGTGAAATTGACCTGTTTTCTGTTCAATCAAAGTGCCAAATGGTAAACCCTCAAGCTTTTGAGCCTATTTCAAACATTACACTGAATATGAGAAACCAGGGCCACAACCAGAGTGGTGTGAATGATTTGGAATCCTTTCAAAGGAACCTGATTTCAGGGAGTGGGTCAGCTCTTGAATCATTAGAGGACTTGCAAGTTCATTGGCTCCAAGGTGACTGTAATCCAATGAATCTTGGACTCCGAAACATTGAATTTTCAGATTACCATGACCAGAAGCTTATTACTGAAGTTCCCTTCCACTTGTATGATCCACTTAAGTTAGACTATGAGTATCTCTCTGACTTGACAGAATATCCTATAATGGATCAAGGTCTATTCATAGCATGA 1785 41.68 MDSAFCPPRTDVFPAGLRVLVVDDDPTWLKILEKMLKKCLYEVTICGLARDALNLLRERKDGYDIVISDVNMPDMDGFKLLELVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKINEVRDIESHESIDDFQIMRNGPEQSDDGYLVSGDPTSVKKRKDTENKHDDRDHCDPSSVKKARVVWSVDLHQKFVRAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKEDDLKTSCGGIKHSDLSPKDSTGSFGLSNLTNMHQNDAANSGYGFSGNKKLVQSIDIDPKVQEGDLKGIISLPRTEQKKMLTGEASDPQKARSSQMGFNDSFGSIEQDVNYAAFDSSISAQYSWSGEKVPEAQFQEEHRPSVQLETSFNQLPVPGPQHHIQVDCLQPTLPPISPGSSRKERDKASPAKIKPLYASYDSHHVSNVSSAGSEIDLFSVQSKCQMVNPQAFEPISNITLNMRNQGHNQSGVNDLESFQRNLISGSGSALESLEDLQVHWLQGDCNPMNLGLRNIEFSDYHDQKLITEVPFHLYDPLKLDYEYLSDLTEYPIMDQGLFIA* 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19206464 19214664 + Vvi1g1119 Vvi1g1119 770319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1119 594 CDD REC_typeB_ARR-like 19 133 - -
Vvi1g1119 594 Gene3D - 17 165 - -
Vvi1g1119 594 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 558 IPR045279 GO:0009736
Vvi1g1119 594 SUPERFAMILY Homeodomain-like 196 255 IPR009057 -
Vvi1g1119 594 PIRSF RR_ARR_type-B 2 563 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vvi1g1119 594 MobiDBLite consensus disorder prediction 155 193 - -
Vvi1g1119 594 SMART REC_2 17 129 IPR001789 GO:0000160
Vvi1g1119 594 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Vvi1g1119 594 SUPERFAMILY CheY-like 16 137 IPR011006 -
Vvi1g1119 594 MobiDBLite consensus disorder prediction 173 193 - -
Vvi1g1119 594 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 558 - -
Vvi1g1119 594 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Vvi1g1119 594 MobiDBLite consensus disorder prediction 425 444 - -
Vvi1g1119 594 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Vvi1g1119 594 Gene3D - 195 257 - -
Vvi1g1119 594 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g1119 Vvi17g904 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14467 PF00072 Response_reg 4.40E-23 CL0304 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1119 - K14491 vvi:100246057 1207.97