Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g112 ATGATCGTCGTTGTCACATCCTCATCCTCGATTTTCTCTTTCTGTTTCGCGCTTTCACTGCTGGCTTTCTTTGCTTCTGCTCATATTCTCACTGATACAGAGGGCAAGAACAGTGATTTGTTTCCTGAAGTTCTACGGGAAGAAGCAGTGGCAAGGCTCTATGAACTTGGAAAGGTAAGCGACGCTGAGGGCTATCTTGAGCGGACCTTCTTGAGTCCAGCGTCTATAAGGGCAGGAAATCTTATTCGAGAATGGATGGAGGATGCCGGTTTGAGAACGTGGATGGACCAAATGGGCAATGTACATGGTCGAGTTGAAGGAATGAATCCAAGTGCTGATGCTTTGTTAATTGGTTCTCATTTGGATACGGTTGTTGATGCTGGAATATTTGATGGGTCACTAGGCATAATTTCTGCTATCTCTGTGTTGAAGGTTTTGAATATCACTGCCAAGTTACAGAAGTTGAGGCGGCCAATTGAGGTGATTGCATTTAGTGATGAGGAGGGAGTTAGGTTTCAGTCCACCTTTTTAGGAAGTGCAGCTGTAGCTGGTGTTTTACCAGCTTCAGCCTTGCAGATATCTGATAAGAGTGGTGTAACAGTGCAAAATGCTCTTATGGATAACTCTATAGAAGCTACAGAGGAAACATTGTCTCAACTGAAGTATGACCCAAAATCTGTTTGGGGTTATGTTGAGGTTCACATTGAACAAGGACCTGTACTAGAAGGGATTGGTCTTCCTCTAGCTGTGGTGAAAGGCATAGCAGGACAGACACGGCTAAAGGTAACAGTGAGAGGTTCACAAGGGCATGCTGGAACGGTCCCAATGTCCATGCGCCAGGATCCTATGGCTGCTGCTGCTGAATTAATTGTTCTATTGGAAAGCCTTTGCAAACGTCCCAAGGATTTTCTATCATATGATGGTCAATGTAATGGTTTTGCAGTTGAATCTCTTTCTGGTTCCCTGGTCTGTACTGTTGGAGAGATATCATCCTGGCCAAGCGCAAGTAATGTGATTCCAGGACAGGTAACATTCACAGTAGATTTACGTGCAATTGATGACATGGGGCGTGAGGCGGTCCTTTATGAATTATCTGACCGGATGTACCAAATATGTGAGAAGCGTTCTGTTTCTTGCACCATTGAGCGGAAGCATGATGCAAATGCTGTGATCTGCGATACTGAATTGAGCACACAGCTGAAGTCTGCTACATACTCTACACTCAAAAGAATGGAAGGCGAGATTCAAGGTGATGTGCCTGTGCTGATGAGTGGAGCAGGGCACGATGCCATGGCAATGTCCCATTTAACTAAGGTTGGCATGCTGTTTGTGCGGTGTCGCGGGGGAATCAGTCACTCTCCTGCAGAGCATGTGTTGGACGAGGATGTCTGGGCTGCTGGCTTGGCCATTCTAGCATTCCTGGAGACCCACTTGTAA 1437 46.0 MIVVVTSSSSIFSFCFALSLLAFFASAHILTDTEGKNSDLFPEVLREEAVARLYELGKVSDAEGYLERTFLSPASIRAGNLIREWMEDAGLRTWMDQMGNVHGRVEGMNPSADALLIGSHLDTVVDAGIFDGSLGIISAISVLKVLNITAKLQKLRRPIEVIAFSDEEGVRFQSTFLGSAAVAGVLPASALQISDKSGVTVQNALMDNSIEATEETLSQLKYDPKSVWGYVEVHIEQGPVLEGIGLPLAVVKGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMAAAAELIVLLESLCKRPKDFLSYDGQCNGFAVESLSGSLVCTVGEISSWPSASNVIPGQVTFTVDLRAIDDMGREAVLYELSDRMYQICEKRSVSCTIERKHDANAVICDTELSTQLKSATYSTLKRMEGEIQGDVPVLMSGAGHDAMAMSHLTKVGMLFVRCRGGISHSPAEHVLDEDVWAAGLAILAFLETHL* 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1098378 1102698 - Vvi1g112 Vvi1g112 769312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g112 478 CDD M20_bAS 50 475 - -
Vvi1g112 478 Pfam Peptidase family M20/M25/M40 116 471 IPR002933 GO:0016787
Vvi1g112 478 TIGRFAM hydantase: amidase, hydantoinase/carbamoylase family 49 471 IPR010158 GO:0016813
Vvi1g112 478 SUPERFAMILY Bacterial exopeptidase dimerisation domain 256 390 IPR036264 -
Vvi1g112 478 Pfam Peptidase dimerisation domain 256 371 IPR011650 -
Vvi1g112 478 PANTHER ALLANTOATE DEIMINASE-RELATED 36 472 IPR010158 GO:0016813
Vvi1g112 478 ProSitePatterns ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 115 124 IPR001261 -
Vvi1g112 478 PANTHER ALLANTOATE DEIMINASE-RELATED 36 472 - -
Vvi1g112 478 Gene3D - 256 388 - -
Vvi1g112 478 SUPERFAMILY Zn-dependent exopeptidases 46 476 - -
Vvi1g112 478 Gene3D Zn peptidases 59 469 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g112 K02083 allC; allantoate deiminase [EC:3.5.3.9] - vvi:100247417 905.59
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g112 . . . . . . . . . Cmo18g00247 . . . . . Cpe09g00933 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009494 1 0 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 2 1 1 1 1 1 1 1 33