Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g112 ATGATCGTCGTTGTCACATCCTCATCCTCGATTTTCTCTTTCTGTTTCGCGCTTTCACTGCTGGCTTTCTTTGCTTCTGCTCATATTCTCACTGATACAGAGGGCAAGAACAGTGATTTGTTTCCTGAAGTTCTACGGGAAGAAGCAGTGGCAAGGCTCTATGAACTTGGAAAGGTAAGCGACGCTGAGGGCTATCTTGAGCGGACCTTCTTGAGTCCAGCGTCTATAAGGGCAGGAAATCTTATTCGAGAATGGATGGAGGATGCCGGTTTGAGAACGTGGATGGACCAAATGGGCAATGTACATGGTCGAGTTGAAGGAATGAATCCAAGTGCTGATGCTTTGTTAATTGGTTCTCATTTGGATACGGTTGTTGATGCTGGAATATTTGATGGGTCACTAGGCATAATTTCTGCTATCTCTGTGTTGAAGGTTTTGAATATCACTGCCAAGTTACAGAAGTTGAGGCGGCCAATTGAGGTGATTGCATTTAGTGATGAGGAGGGAGTTAGGTTTCAGTCCACCTTTTTAGGAAGTGCAGCTGTAGCTGGTGTTTTACCAGCTTCAGCCTTGCAGATATCTGATAAGAGTGGTGTAACAGTGCAAAATGCTCTTATGGATAACTCTATAGAAGCTACAGAGGAAACATTGTCTCAACTGAAGTATGACCCAAAATCTGTTTGGGGTTATGTTGAGGTTCACATTGAACAAGGACCTGTACTAGAAGGGATTGGTCTTCCTCTAGCTGTGGTGAAAGGCATAGCAGGACAGACACGGCTAAAGGTAACAGTGAGAGGTTCACAAGGGCATGCTGGAACGGTCCCAATGTCCATGCGCCAGGATCCTATGGCTGCTGCTGCTGAATTAATTGTTCTATTGGAAAGCCTTTGCAAACGTCCCAAGGATTTTCTATCATATGATGGTCAATGTAATGGTTTTGCAGTTGAATCTCTTTCTGGTTCCCTGGTCTGTACTGTTGGAGAGATATCATCCTGGCCAAGCGCAAGTAATGTGATTCCAGGACAGGTAACATTCACAGTAGATTTACGTGCAATTGATGACATGGGGCGTGAGGCGGTCCTTTATGAATTATCTGACCGGATGTACCAAATATGTGAGAAGCGTTCTGTTTCTTGCACCATTGAGCGGAAGCATGATGCAAATGCTGTGATCTGCGATACTGAATTGAGCACACAGCTGAAGTCTGCTACATACTCTACACTCAAAAGAATGGAAGGCGAGATTCAAGGTGATGTGCCTGTGCTGATGAGTGGAGCAGGGCACGATGCCATGGCAATGTCCCATTTAACTAAGGTTGGCATGCTGTTTGTGCGGTGTCGCGGGGGAATCAGTCACTCTCCTGCAGAGCATGTGTTGGACGAGGATGTCTGGGCTGCTGGCTTGGCCATTCTAGCATTCCTGGAGACCCACTTGTAA 1437 46.0 MIVVVTSSSSIFSFCFALSLLAFFASAHILTDTEGKNSDLFPEVLREEAVARLYELGKVSDAEGYLERTFLSPASIRAGNLIREWMEDAGLRTWMDQMGNVHGRVEGMNPSADALLIGSHLDTVVDAGIFDGSLGIISAISVLKVLNITAKLQKLRRPIEVIAFSDEEGVRFQSTFLGSAAVAGVLPASALQISDKSGVTVQNALMDNSIEATEETLSQLKYDPKSVWGYVEVHIEQGPVLEGIGLPLAVVKGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMAAAAELIVLLESLCKRPKDFLSYDGQCNGFAVESLSGSLVCTVGEISSWPSASNVIPGQVTFTVDLRAIDDMGREAVLYELSDRMYQICEKRSVSCTIERKHDANAVICDTELSTQLKSATYSTLKRMEGEIQGDVPVLMSGAGHDAMAMSHLTKVGMLFVRCRGGISHSPAEHVLDEDVWAAGLAILAFLETHL* 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1098378 1102698 - Vvi1g112 Vvi1g112 769312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g112 478 CDD M20_bAS 50 475 - -
Vvi1g112 478 Pfam Peptidase family M20/M25/M40 116 471 IPR002933 GO:0016787
Vvi1g112 478 TIGRFAM hydantase: amidase, hydantoinase/carbamoylase family 49 471 IPR010158 GO:0016813
Vvi1g112 478 SUPERFAMILY Bacterial exopeptidase dimerisation domain 256 390 IPR036264 -
Vvi1g112 478 Pfam Peptidase dimerisation domain 256 371 IPR011650 -
Vvi1g112 478 PANTHER ALLANTOATE DEIMINASE-RELATED 36 472 IPR010158 GO:0016813
Vvi1g112 478 ProSitePatterns ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 115 124 IPR001261 -
Vvi1g112 478 PANTHER ALLANTOATE DEIMINASE-RELATED 36 472 - -
Vvi1g112 478 Gene3D - 256 388 - -
Vvi1g112 478 SUPERFAMILY Zn-dependent exopeptidases 46 476 - -
Vvi1g112 478 Gene3D Zn peptidases 59 469 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g112 K02083 - vvi:100247417 905.59