Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1120 ATGTCTGAATCATTGGCATGGGAGAAATGGTCATCTTTCTCTCAGAACCGCTACTTAGAAGAAGCTGAAAAATTTTCCAAGCCTGGTTCTGTTGCCCAGAAAAAAGCATATTTTGAAGCCCATTACAAGAGAATAGCTGCCAAGAAAGCAGCCGAAGCAGAAGCAGCCGCTAATGATTTTCCGGAACCAGAAGCTTTAGATGAGATTCACAATACCTCCTCAGATGATTTGGACACTGTGAAAGAGAACAGTCACATGATAATTGATGAATCAGAGGGACAAGAAGCCCTTAATACTAATACAGTTGTGGATGAGATCCACAATAGCTCCTCAGATGAATTGGACACTTTGAAAGAGAATAGCCCCATGATTATTGATGAACCAGAGGGACAAGAGGAGGCCCCCAATACTCAGCTAGTTGTTGATTGTGTGGAAAAGATTGAATTGGAAGAGGTAAAAGTAGAGGAAGTAGAGGAAGCAGAACCAGTGACAGTACAAACTGTTATAGAGGAGAGTCCTCGTGCTCAAACTGAATTTTCAGACCAGATTGAAAATGTTGAAGAAGAGAGGATGCCCCTTAAGGAGGTTGCTGATGAGGAGAAGAATCTGGCTTTGAGGAGTAACAAGAAGCTAGCCAAATCTTCCTCTAAGTCATCGACTCAAGGCCGAGCATCCAAGCTTGGAGCTTCTCCTGCAAAAGTAACATCCTTGGCTCATGTCAGAAAAGAAAACAATGCCAGTCCAAGCACCAAGAAGCCTGCACCAGATGCTCTGAACAAGAAGAGGTTTACTCCAAAATCACTTCACATGTCGATTAACTTTGCCTCTCTTGCTGGTGAAACCAGCAAAAAGGCGTCTCCTGTTCTTCAAAAGAATAGAAATTCAAGAATTAATGCAATTGCTGCCAAAATAACCGAAGAGAGCTCAACTCCCAGACGAACAACAATTAGGGCATCCATGAGTGGGATATCAAAGCATACTTCAGCAACAACCCCTCAGTCAGAAAATAGAAGGACCAGAACTCTACTTGATCAGTCAGTTTCTGGGAACAGAACAGCTGAAGGGAAATGGCAGTCACTCTTGGCAGAGCGACCACAACCTTCAGTTGCATGCGGAAGCAAATCAAGGTCTCCTATTATATCTTCTCCGTTTAGATTCAGGAGTGAAGAAAGAGTAGCAAAACGCAAAGAGTTCTTTCAGAAACTAGAAGAGAAGAATGCCAAGGAGGCAGAGAAAATGCAGCTGCAGACAAAATCTAAGGAAAAACCCGAGACTGATCTGAAAAAACTGCGCCGCAGTATTACCTTCAAAGCCATACCAACTACAGATTCTTGCCGTGAAACAGAATCACCCGGTAATCACATGATGAAGGAGAAAGGTGAGAGCAATCTTAAAAAACTGAGACACAGCATTACCTTCAAACCAGGTTCTTGTCGTGAAACAGACTCACCTGGTAATCACATGAAGAAGGAGAAAGGTGAGAGCGAGCTTAAAAAACTGAGACACAGCATTTCCTTCAAACCAGGTTCTTGTCGTGAAACAGACTCACTTGGTAATCACATGAAGAAGGAGAAAGGTGAGAGCGAGCTTAAAAAACTGAGACACAGCATTACCTTCAAACCAGGTTCTAGTCATGAAACAGACTTGCCTGGTAATCACATAAAGAAGACTCCACCAACACGGCCTCGCTCCCCAAAACTTGGGAGGAAGCCAACTCCCAATGCAGTCCAGGACACAAACTCCAGGCCTCCTAGAGTGCCTTCATCCAGAACTGATAGCTCCAACAAGCCTGCTACAGAAAAGAATAAACTACTCCTACCAAAGAATAATTCACAAGAGAATGCCTCCCCAAATATCCAGCTTTGA 1866 43.46 MSESLAWEKWSSFSQNRYLEEAEKFSKPGSVAQKKAYFEAHYKRIAAKKAAEAEAAANDFPEPEALDEIHNTSSDDLDTVKENSHMIIDESEGQEALNTNTVVDEIHNSSSDELDTLKENSPMIIDEPEGQEEAPNTQLVVDCVEKIELEEVKVEEVEEAEPVTVQTVIEESPRAQTEFSDQIENVEEERMPLKEVADEEKNLALRSNKKLAKSSSKSSTQGRASKLGASPAKVTSLAHVRKENNASPSTKKPAPDALNKKRFTPKSLHMSINFASLAGETSKKASPVLQKNRNSRINAIAAKITEESSTPRRTTIRASMSGISKHTSATTPQSENRRTRTLLDQSVSGNRTAEGKWQSLLAERPQPSVACGSKSRSPIISSPFRFRSEERVAKRKEFFQKLEEKNAKEAEKMQLQTKSKEKPETDLKKLRRSITFKAIPTTDSCRETESPGNHMMKEKGESNLKKLRHSITFKPGSCRETDSPGNHMKKEKGESELKKLRHSISFKPGSCRETDSLGNHMKKEKGESELKKLRHSITFKPGSSHETDLPGNHIKKTPPTRPRSPKLGRKPTPNAVQDTNSRPPRVPSSRTDSSNKPATEKNKLLLPKNNSQENASPNIQL* 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19214736 19218992 - Vvi1g1120 Vvi1g1120 770320

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1120 621 MobiDBLite consensus disorder prediction 208 226 - -
Vvi1g1120 621 MobiDBLite consensus disorder prediction 181 207 - -
Vvi1g1120 621 MobiDBLite consensus disorder prediction 55 78 - -
Vvi1g1120 621 MobiDBLite consensus disorder prediction 409 621 - -
Vvi1g1120 621 MobiDBLite consensus disorder prediction 516 541 - -
Vvi1g1120 621 PANTHER TPX2 (TARGETING PROTEIN FOR XKLP2) PROTEIN FAMILY 1 455 - -
Vvi1g1120 621 PANTHER TPX2 (TARGETING PROTEIN FOR XKLP2) PROTEIN FAMILY 520 620 - -
Vvi1g1120 621 Pfam Targeting protein for Xklp2 (TPX2) domain 384 440 IPR027329 -
Vvi1g1120 621 MobiDBLite consensus disorder prediction 573 621 - -
Vvi1g1120 621 MobiDBLite consensus disorder prediction 409 433 - -
Vvi1g1120 621 MobiDBLite consensus disorder prediction 483 508 - -
Vvi1g1120 621 MobiDBLite consensus disorder prediction 157 266 - -
Vvi1g1120 621 PANTHER TPX2 (TARGETING PROTEIN FOR XKLP2) PROTEIN FAMILY-RELATED 520 620 IPR044216 -
Vvi1g1120 621 PANTHER TPX2 (TARGETING PROTEIN FOR XKLP2) PROTEIN FAMILY-RELATED 1 455 IPR044216 -
Vvi1g1120 621 MobiDBLite consensus disorder prediction 301 352 - -
Vvi1g1120 621 MobiDBLite consensus disorder prediction 63 78 - -
Vvi1g1120 621 MobiDBLite consensus disorder prediction 450 468 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1120 - - - vvi:100251196 1115.52
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1120 Vvi14g1239 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1120 . . . . . . . Bma15g00249 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1109 Cone19ag1097 . . . . . . . . Bda07g01413 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0031734 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1