Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1126 ATGGACGACTATACCCCTCAAGCCCTCTGTCTCCTAGCAGTTTTATTCATCACATTGCTCCTCCTACCACCGTCTCCGCCGCCGCTTCCAATCATTGGCCACCTCCACCTCCTCACAGACATGCCCCACCACAGTTTGTCCGACCTCGCCCTCAAACTTGGCCCCATTATCCATCCCCGCCTGGGCCAAGTCGCCACCGTGGTGGTCTCCTCCGCCCGACTCGCCGCCCTCGTCCTCAAAACCCACGATCACGTCTTCGCCAGTCGGCCGCCACTCACCGCCGCCCAGTACCTCTCCTTCGGCTGCTCTGACGTCACCTTCTCCCCCCACGGCACCTATTGGCGCCAAGCCCGAAAAATCTGCGTCACAGAGCTTCTCAGCCCGAAACGAGTCACCTATTTTCAATTCATCCGAAACGAGGAGACCCACCCACCACCTCATCACCTCCCTTCCTCCCTTTCCGCACTCTCCGGCTCGGAAACCGACATGAGCCAGCTCTTCTTCACTCTAGCCAACAACCTCTGTCGCGTGGCTTTCGGCAAGAGATTCATGGACGATTCCGAAGGAGAAAAGAAACACATGGTGGATGTTCTGACCGAAACACAAGCTTTATTCGCCGGCTTCTGTATCGGAGATTTTTTCCCAGACTGGAAATGGCTAAACAGCATCACAGGATTGAACCGAAGACTCAGAAAAAACCTAGAAGAACTGATAGCAGTTTGCAACGAGATTATAGAAGAACATGTAAACGAGAAGAAGGAAAGAGAAGACTTCGTAGGCGTTCTGCTTCGAGTGCAGAAACGGAAGGACTTGGAAGTGGCGATAACAGATGATAATCTGAAAGCTCTGGTTCTGGACATGTTCAATTGCATCCTGGACGGCTATGAAATACCTGCAAAAATTCAACTTCTTATTAACACCTATGCTATTGGGTCGACTCCAAGATGGAGGAATCCTCTGGACTACAATCCTAAGAGGTTTGTTGATGGGGATGTTGATTTTAAGGGTCAAGACAGCGGCTTTCTACCATTTGGGGGAGGAAGGAGAGGCTGCCCAAGTTATTCTTTTGGATTGGCGACAGTTGAGATTGCACTTGCTAGACTTTTGTATCATTTCGACTGGGAGTTGCCTCATGGTGTTGAGGCTGATGACATGGACCTAAATGAGATTTTCGGCCTGGCCACAAGAAAAAATTCTGGTCTGATACTTGTCCCCAGATACAACAGAGACTATGAAATGAAGAAGAATGATACTTAG 1257 50.28 MDDYTPQALCLLAVLFITLLLLPPSPPPLPIIGHLHLLTDMPHHSLSDLALKLGPIIHPRLGQVATVVVSSARLAALVLKTHDHVFASRPPLTAAQYLSFGCSDVTFSPHGTYWRQARKICVTELLSPKRVTYFQFIRNEETHPPPHHLPSSLSALSGSETDMSQLFFTLANNLCRVAFGKRFMDDSEGEKKHMVDVLTETQALFAGFCIGDFFPDWKWLNSITGLNRRLRKNLEELIAVCNEIIEEHVNEKKEREDFVGVLLRVQKRKDLEVAITDDNLKALVLDMFNCILDGYEIPAKIQLLINTYAIGSTPRWRNPLDYNPKRFVDGDVDFKGQDSGFLPFGGGRRGCPSYSFGLATVEIALARLLYHFDWELPHGVEADDMDLNEIFGLATRKNSGLILVPRYNRDYEMKKNDT* 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19241664 19244752 - Vvi1g1126 Vvi1g1126 770326

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1126 418 PANTHER TRYPTAMINE 5-HYDROXYLASE 289 417 - -
Vvi1g1126 418 PANTHER TRYPTAMINE 5-HYDROXYLASE 22 289 - -
Vvi1g1126 418 PRINTS E-class P450 group I signature 50 69 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1126 418 PRINTS E-class P450 group I signature 74 95 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1126 418 PRINTS E-class P450 group I signature 305 329 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1126 418 PRINTS E-class P450 group I signature 341 351 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1126 418 PRINTS E-class P450 group I signature 351 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1126 418 SUPERFAMILY Cytochrome P450 23 404 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1126 418 Gene3D Cytochrome P450 290 401 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1126 418 Gene3D Cytochrome P450 19 289 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1126 418 Pfam Cytochrome P450 23 288 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1126 418 Pfam Cytochrome P450 291 397 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1126 418 Coils Coil 227 251 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1126 K24541 CYP71P1; tryptamine 5-hydroxylase [EC:1.14.-.-] - jre:108985324 358.221
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1126 . . Bda01g01726 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0717 . . . . . . . . . . . . Bma06g00585 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002472 0 1 0 1 0 4 0 3 2 3 3 4 0 3 2 0 4 4 0 3 5 3 2 2 1 3 1 2 1 1 58