Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1127 ATGGCAACTGAGGGAAGAGACAATCTTGACCACTTGCGGAGGGCAGGCAAACATAATCCCCAAAAGAAGAGAGCCCCCCAAGTTGCACCCATTGGGTTGTGGGATAGGTTTCCAACAGCAAGAACTGTGCAGCAGATGATGGAGACGATGGAGAGGATGATGGAGGACCCTCTTGCCTACAGTGGTGGGTGGCCCAGTGAGAGTGGTGGTTACAGTAGGGGAAGGACTCCATGGGAGATTAAAGAAGATGAGGGAGAATACAAGATAAGGTTTGACATGCCAGGTATGACCAAGGATGATGTGAAGTTGTGGGTTGAGGAGAAAATGCTGGTCATCAAGGCTGAGAAGATGAGTGGGACTGAAGGAAATGGGGAGGAAGATGAGGGAGCATGGTCTGCAAAGAGCTACGGCAGATACAATAGCAGGGTTGCATTGCCTGAGAATGTCCAATTTGAGAAGATTAAAGCAGAGGTCAAAGATGGAGTCTTGTATATAACCATTCCAAAGGCCAGTGACAACCCCAAGATTTTGGATATCAATGTGGAATAA 549 47.91 MATEGRDNLDHLRRAGKHNPQKKRAPQVAPIGLWDRFPTARTVQQMMETMERMMEDPLAYSGGWPSESGGYSRGRTPWEIKEDEGEYKIRFDMPGMTKDDVKLWVEEKMLVIKAEKMSGTEGNGEEDEGAWSAKSYGRYNSRVALPENVQFEKIKAEVKDGVLYITIPKASDNPKILDINVE* 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19257334 19258407 + Vvi1g1127 Vvi1g1127 770327

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1127 182 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 69 182 IPR002068 -
Vvi1g1127 182 PANTHER 26.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 3 182 IPR044587 GO:0009408
Vvi1g1127 182 MobiDBLite consensus disorder prediction 1 15 - -
Vvi1g1127 182 MobiDBLite consensus disorder prediction 1 26 - -
Vvi1g1127 182 PANTHER 26.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 3 182 - -
Vvi1g1127 182 SUPERFAMILY HSP20-like chaperones 51 179 IPR008978 -
Vvi1g1127 182 Gene3D - 32 181 IPR008978 -
Vvi1g1127 182 Pfam Hsp20/alpha crystallin family 79 175 IPR002068 -
Vvi1g1127 182 CDD ACD_sHsps-like 79 169 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1127 K13993 HSP20; HSP20 family protein - vvi:100261354 373.244
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1127 . . . . . Bpe10g00774 . . Cmo04g01905 . . . . . Sed01g3445 . Cpe01g01592 Bhi07g01860 Tan04g0105 Cmetu09g1622 Lac13g0095 Hepe10g1551 . . Cla05g02629 Cam05g2820 Cec05g2855 Cco05g2888 Clacu05g2823 Cmu05g2671 Cre05g2788 Cone13ag1110 Cone19ag1098 . . Lsi04g00644 . . . Blo06g00817 . . . . . . . . . . Cma04g01808 . Car04g01821 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012314 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 29