Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g113 ATGGAGAATATATTTCCTCACCTCACAAGCCACGGCCTTTACTTTCTTTGTAAAAATACCTTTAGCGCAACGTCAAACTTGTATTTGGTACGGGTAAAAATGGAAGCAATATCAGTGTCTATGTTAATGGGGTTGGCCATGGCCATGGCTAGCTTGCTTATAATCCGGGTTTCCGGCCAAGATTCTCCGGTGGATCACTTTTCCGGGGGACATTACAGCCAACAAATGCGAAAAATGAAAGCCCTGAAGACCTCATTGCTCCGCCGTGACTCGGTTTCTCTTCCCCCGAGCTCAGCCGCTGCTCCTTCTCCTAGCGGGACTCCACGTCTGTATCTCGTGACATCGTACGGTGCGGATCCAACGGGAGTGGCCGATAGTACGGAGGCCATTCTTGGGGCGTTATCGGACGCGTTTAAGGGGCCCAGTGACGGGGTCTTGATGGAGGGAATTGCAAATCTGGGAGGTGCACGGATTGATCTGGAAGGCGGCAGTTACCTGATCAGCAGACCCCTGAGGTTTCCGGCCACCGGCGCTGGAAACATAATGATCCATGGAGGAACACTGAAAGCATCGGATAATTTTCCGGCTGATGGCTACCTCATTGATTTATCTTCTAGCTCTAGCAACCAGAAGAAAGAAAACAACCAGACCACCCCTCAGAGACCTCATGTTGGATTCCAACTACCGGGGCGGCGGCATTGCAGTCATAAACTCTCTCAGAACCACCATAGACAACTGCTACATCGCCCATTTCAACACCACCGGAATCCTCATCCAAGGTGGCCACGAGACCCTCCGGCAGTGGGCGTGATGGTGTCCGGCCAAGCCAACACCCTCTCCGGGGTTCACTGCTATAACAAAGCCACTGGGTTCGGGGGCACCGGGATATACCTCAAGCTGCCGAGCTTGACACAGACCCGGATCGTGAACTGTTACTTGGACTACACCGGGATTGTTGCAGAAGACCCAGTTCAGCTTCATATCTCTAGCAGCTTCTTCCTGGGCGATGCCTACATCGTCTTCAAGTCCATTAATGGCGTAGCCAGAGGGGTCAGCGTGGTGGGCAACATGTTCAGTGGGTCAGGAAAAGGGGTGGAGATTGTTCAGTGGAAATATACTTTTGATCATCATCCATATGTTCAAATGTCAAAGCCTTTTGAGTCGATTTTTGGCACCATGGAAGACTGGCTGGAAGTCTGGGAAATTTTCCAATTCGAAGATTGTGATGAAATGGGTCTTGTTCCATTTTTCCATGTTGAAAATGGAAAATCAACTTGTGCCCATTAG 1287 50.43 MENIFPHLTSHGLYFLCKNTFSATSNLYLVRVKMEAISVSMLMGLAMAMASLLIIRVSGQDSPVDHFSGGHYSQQMRKMKALKTSLLRRDSVSLPPSSAAAPSPSGTPRLYLVTSYGADPTGVADSTEAILGALSDAFKGPSDGVLMEGIANLGGARIDLEGGSYLISRPLRFPATGAGNIMIHGGTLKASDNFPADGYLIDLSSSSSNQKKENNQTTPQRPHVGFQLPGRRHCSHKLSQNHHRQLLHRPFQHHRNPHPRWPRDPPAVGVMVSGQANTLSGVHCYNKATGFGGTGIYLKLPSLTQTRIVNCYLDYTGIVAEDPVQLHISSSFFLGDAYIVFKSINGVARGVSVVGNMFSGSGKGVEIVQWKYTFDHHPYVQMSKPFESIFGTMEDWLEVWEIFQFEDCDEMGLVPFFHVENGKSTCAH* 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1107409 1111568 + Vvi1g113 Vvi1g113 769313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g113 428 Gene3D - 95 379 IPR012334 -
Vvi1g113 428 MobiDBLite consensus disorder prediction 202 223 - -
Vvi1g113 428 PANTHER POLYGALACTURONASE QRT3 267 371 IPR039279 GO:0004650
Vvi1g113 428 PANTHER POLYGALACTURONASE QRT3 40 213 IPR039279 GO:0004650
Vvi1g113 428 SUPERFAMILY Pectin lyase-like 99 367 IPR011050 -
Vvi1g113 428 PANTHER POLYGALACTURONASE QRT3 267 371 - -
Vvi1g113 428 PANTHER POLYGALACTURONASE QRT3 40 213 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g113 - - vvi:100242282 455.677