Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1131 ATGAAACCAGAGATAATATCCAGAGAAACTATCAAACCTTCCTCTCCAACCCCACATTCCCAAAGATGGTACAAGCTCTCCGTATTCGATCAAATGAGTTATGGCGTGTATATTCCCATCATCCTATTCTACACCAGCAATGGCGGTGATAACCCATGCAATGATAAGGGGGTTGATTTCTTTGAAGCCCGGATGCACTGTCATCTGCAAGGATTTCTAAATCATCCTGAGTTTGAGGCTCTGAACCTGCTTGCTCAAGGTCAAATCCAGTGTAACAACTTAGATTTGAGCAGTACATTGATCGTTCAGATCACCTTCTTCGATTGCGGGGGAATGGCCATTGGGGTGTCTATGTCACACAAGGTTGCTGATATATCCTCCATGAGCGCCTTCTTAAATGACTGGGCCACGATGGCACGGCAATCAGGTGAAGCAGAAATCTCCGCTCAGTTCATCACTTCATTCTTCCCACCTCATGATTCATTAGACATACCTGAGTATGTGCCAAGGAAAATAAATCGTGTGGTAAGGAGGTTTGTATTCAATGCCTCAAAGTTAGATGCACTCAAGACCTTGGCTACTAGCCATGGAGTAGAAAATCCCACACGGGTCCAAGTTGTAACTGCACTACTATATAAATGTGCCGATGCTGCATCTAGAGCAGTCTCAGATTCACCGAGGGCATCGGACTTGGTACAAATGGTGAACCTGCGCAGACTAGTAATCCCGCCATTGCCAGACAAGTCCTTTGGAAACTTGGTTTGGTGCTTTTCAATATCTGCCACCGAGGAGGGTGAAGTTGAGTTCCATGACTTGGTGGCCCAGTTGAAGGAAGGGATAGCAGGTTTTCGTCTTACCTATGGAATAAGTTTTAGTTGGTATGAATTGTCCCGGCTGGTTTCTGAGTTTAGGAAAGCATCTGCAAGCTCATTCAAGAGGAAGGGGAATATGGTTAGGTTTACATGTACTAGCTGGTGTAGGTCCCCATTATACCAAGTGGATTTTGGGTGGGGAAAACCCGTATGGATTAGCTGCACAAATGTTATGTGGAATACCTTTATTTTGATGGATACTAGAAGTGGAGATGGAATAGAAGCGTTGGTTAGTCTTGAAGAACAAAACATGAACGTATTTGAACATGATGAGGAGCTCCTTCGATTCGCCTCTTTGAATCCAAATGCTTTTGAAGCCCCTTGA 1197 44.53 MKPEIISRETIKPSSPTPHSQRWYKLSVFDQMSYGVYIPIILFYTSNGGDNPCNDKGVDFFEARMHCHLQGFLNHPEFEALNLLAQGQIQCNNLDLSSTLIVQITFFDCGGMAIGVSMSHKVADISSMSAFLNDWATMARQSGEAEISAQFITSFFPPHDSLDIPEYVPRKINRVVRRFVFNASKLDALKTLATSHGVENPTRVQVVTALLYKCADAASRAVSDSPRASDLVQMVNLRRLVIPPLPDKSFGNLVWCFSISATEEGEVEFHDLVAQLKEGIAGFRLTYGISFSWYELSRLVSEFRKASASSFKRKGNMVRFTCTSWCRSPLYQVDFGWGKPVWISCTNVMWNTFILMDTRSGDGIEALVSLEEQNMNVFEHDEELLRFASLNPNAFEAP* 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19335592 19336894 - Vvi1g1131 Vvi1g1131 770331

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1131 398 Gene3D - 1 51 IPR023213 -
Vvi1g1131 398 Gene3D - 52 169 IPR023213 -
Vvi1g1131 398 Pfam Transferase family 53 384 - -
Vvi1g1131 398 Pfam Transferase family 4 47 - -
Vvi1g1131 398 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 53 394 - -
Vvi1g1131 398 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 4 47 - -
Vvi1g1131 398 Gene3D - 173 386 IPR023213 -
Vvi1g1131 398 PANTHER F21J9.9 4 47 - -
Vvi1g1131 398 PANTHER F21J9.9 53 394 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1131 - - - vvi:109123455 793.882
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1131 . Blo16g01185 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1115 Cone19ag1101 . . Lsi04g00647 . . Cme10g00627 . . . . . . . Bma06g00583 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001401 10 2 5 5 4 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 0 2 2 1 74