Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1133 ATGATCAAACAGATATTTAGTAAGCTTCCTCGGAAGTTGTCTAAGGCAGTTGAAAATCGTGAGCTTGGTGGGACGACTGCATTCTCGAATAATTCTAATAGATCAAGAGGCAGTGATGTGGAGAGCAACCAGTTTGCAAATCTGAATGTCAATGGGAATTATATGACTCCTAACACTTACGAAGCATTGCCGGCCTTCAGGGATGTCCCCAGTTCCGAGAAACAGAATTTGTTCATTGGAAAGCTGAACTTGTGTTGTGTCGTGTTTGACTTCACGGACCCAACAAAGAACATCAAAGAAAAGGAGATCAAGCGTCAGACATTATTAGAGCTTGTGGATTATGTTACTTCTGCATCTGGGAAATTCACAGAAACGCCGTCGATTGATCCTGCTTGGCCTCACTTGCAAATTGTGTATGAGTTTCTCCTAAGGTTTGTGGCATCACCTGAGAGTGATGCCAAGTTGGCTAAGAGGTACATTGATCACTCATTTGTTCTTAAGTTGTTGGATCTATTTGACTCTGAAGACCCCAGAGAAAGGGAATACCTAAAAACAATTCTTCATCGTGTCTATGGCAAATTTATGGTACACCGCCCATTCATCAGGAAGGCTATCAACAACATATTCTATCGTTTTATTTTTGAGACTGAAAAGCATAATGGCATAGCTGAACTTTTAGAAATTTTGGGCAGCATAATAAATGGGTTTGCTCTGCCACTGAAAGAAGAACACAAACTGTTCCTTGTCCGGGCACTGATTCCCTTGCACAAACCAAAGTGCTTACCAATGTATCATCAACAGCTGTCTTATTGTATTAGTCAGTTTGTGGAGAAAGACTGCAAGCTTGCTGATACAGTTATAAGGGGTTTATTAAAATATTGGCCAATCACAAACAGTTCAAAGGAAGTCATGTTCCTAAGCGAGTTAGAAGAAATTTTAGAAGCAACCCAGCCAGCAGAATTCCAGCGCTGTATGGTGCCCTTGTTTCACCAAATTGCTCGTTGCTTGAACAGCTCACACTTCCAGGTGGCAGAGAGAGCTTTGTTCCTATGGAATAATGGTCACATTGAGAACTTAATCAAACAAAATCGCGGTATTATATTGCCCATCATCTTCCCTGCCTTGGAGAAAAATGCTAGAAACCATTGGAATCAGGCTGTCCATGGCTTGACTTTAAATGTCCGCAAGATTTTCTTTGATCTTGATCCTGAGCTGTACAAGGAATGCTTGCTCAAGTTCCAGGAAGACGAATCAAAGGAAGATGAAATTAAAGCCAAACGGGAAGCCGCATGGAAACTTCTAGAAGAAATGGCTGCAAAGAGAGTTGCAAGTAATGAAGCTGTGCTTGTCCCCTGA 1356 41.59 MIKQIFSKLPRKLSKAVENRELGGTTAFSNNSNRSRGSDVESNQFANLNVNGNYMTPNTYEALPAFRDVPSSEKQNLFIGKLNLCCVVFDFTDPTKNIKEKEIKRQTLLELVDYVTSASGKFTETPSIDPAWPHLQIVYEFLLRFVASPESDAKLAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRVYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCLPMYHQQLSYCISQFVEKDCKLADTVIRGLLKYWPITNSSKEVMFLSELEEILEATQPAEFQRCMVPLFHQIARCLNSSHFQVAERALFLWNNGHIENLIKQNRGIILPIIFPALEKNARNHWNQAVHGLTLNVRKIFFDLDPELYKECLLKFQEDESKEDEIKAKREAAWKLLEEMAAKRVASNEAVLVP* 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19401812 19415232 - Vvi1g1133 Vvi1g1133 770333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1133 451 SUPERFAMILY ARM repeat 75 420 IPR016024 -
Vvi1g1133 451 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 63 120 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vvi1g1133 451 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 123 438 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vvi1g1133 451 Gene3D - 70 437 IPR011989 -
Vvi1g1133 451 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A 59 KDA REGULATORY SUBUNIT B' ETA ISOFORM 124 450 - -
Vvi1g1133 451 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A 59 KDA REGULATORY SUBUNIT B' ETA ISOFORM 1 125 - -
Vvi1g1133 451 PIRSF PP2A_B56 8 126 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vvi1g1133 451 PIRSF PP2A_B56 123 449 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vvi1g1133 451 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 124 450 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vvi1g1133 451 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 125 IPR002554 GO:0000159|GO:0007165|GO:0019888
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1133 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' - vvi:100245943 875.544
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1133 Vvi14g1233 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1133 Blo01g00375 Blo16g01186 Bda01g02195 . Bpe13g00517 . . Bma15g00248 . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag1103 Cone8ag0719 . . . . . Blo06g00818 . . . . . Bma01g00027 Bma06g00582 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000671 5 4 6 5 5 2 4 2 2 2 2 2 3 2 2 4 2 8 3 2 2 4 2 2 2 2 2 9 5 3 100