Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1134 ATGGTGAGAGAAAAGAAAGACAGAAGATACAACCTACTCGCTCTCACTGGATCCGCTGCTCTTCTCGCACTTGCCATAAACCTCGCAATCTCCGCCGTCAACGCCCACACCAAGAAAAGAAAGCGCAGAGATCTTGCTGGTTCTAACGTGCGTGTGAATCTTTCGGCACCTGAGATTCTCCAATTGGCGAACAGCATTATCTCCAAGTCGAAGGCCGTGCATGATGCGGTTGGTTCAGTTCCTCTTGATAAGGCCACATATGCCAATGTTGTTTTGCCTCTGGCAGAGTTGGAGGCCCAACAATTCCCCACTGAGGAGGTACGCAAAGCGAGTGCTGAAGCAGAGCAGAGAATTGATTCTCATGTTTTGATGTGCAGTCAGCGTGAAGATGTATACTGTGTTGTCAAAGCTTTTGTTGCAAGAGGAGAATGGATAAGTCCTGAAGCTAACCGATATGTACAATGTTTGATTAGAGACTTTGAGCGGAATGGCTTGAACCTTACTTCAACAAAAAGAGAGGAAGTGCAGCGGTTGAGAGCTCATATAGATGATCTTAGTGTACTATATATAAAAAATATGAGTGATGAAAGTACTTTTCTCCTCTTCAGTGAGACTGAGCTAGCTGGGTTACCACCGGAGTTCCTTCAGAGCCTAGACAAAGCTGAGAATGGTAAATTTAAGGTTTACTTGAGAAGTCGTCATGTTATTCCAGTATTGGAGCTTTGTAAGATAGGGATGACCAGGAAGACAGTAGCTGTGGCATATGGGAAGAGGGGTGGAGAAGCAAATCCTTCTGTCTTGAAAAGTCTGATTCAACTGCGCCATAAATTGGCTCGATTGCTCAGCTATTCAAATTATGCAGACTATGCTGTTGCTCCCAGAATGGCAAAGTCATCCTCAAAGGTATTTGAGTTTTTAGAGGACATCTCTGCCAGTGTAAATGAATTAGCTGCCAGAGAGCTTGACATGTTGAAAGACTTAAAGCGGAAAGAGGAAGGAGAGTTTCCATTTGGAAATGAGGATCTACTGTACTATATGAAGAGGGTTGAAGAGCAATATCTTGACCTTGACTTTGGCGTACTTAAGCAATACTTTCCCATCAATTTGGTTTTACCTGGGATCTTCAAAATATTCCAAGACCTTTTTGGTTTAAGATTTGAGGAAATTGCTGATGTTGAAGTTTGGCACTCTGATGTTCGTGCTTTTTCTGTTTTTGACTTAAGTTCTAGTGAGCTCTTGGGTTATTTCTACCTTGATATTCACCCCAGGGAAGGAAAATATGGTCACATCTGCGTTGTAGCTCTGCAAAATGGTTCATTATCATCCAATGGTGCTCGACAGATACCAGTAGCATTGCTTATTTCGCAATGTCAGAAGGAAGTTGATGATCATCCTGGCCTATTGCGTTTCTCCGAAGTGGTTAATCTTTTCCATGAGTTTGGTCATGTGGTCCAACATATCTGCAATCGTGCATCATTTGCTAGATTTTCTGGGCTACGTGTTGATCCTGACTTTGTGGAGATCCCTGCTCGGGTGTTTGAAAACTGGTGTTATGAAAGCTTCTCACTGAAATTGATATCTGGTTTCCATCAGGATATCACGAAGCCCATTGAGGATAGAATGTGCGAATCACTTAAAAGATGGAGATCTTCCTTTTCAGCACTTAAATTGAAGCAAGAAATTCTTTATTGTCTTTTCGATCAGATTATACATTCAACTGAAGATGTTGACATGGTCAAGCTATTCAGGGATCTGCATCCAAAGGTCATGTTAGGATTGCCAATGTTGGAAGGAACCAATCCAGCATCATGTTTTCCACGTAGTGCTGTTGGTTTTGAGGCTACTTGCTACAGTCGCATTTGGAGTGAGGTTTTTGCAGCTGATATGTTTGCCTCAAAGTTCCCTGGCGGTCTTCTGAGCCAGTATATTGGCATGCAGTTCAGGAAAAAGGTATTGGCCTTGGGGGGATCGAAAGACCCCATTGACATTCTATCAGATTTCCTTGGGAGAGAACCTTCAATTCAAGCTTTTGTAGAGAGCAAAGTCCAAGCTAGTTTGTGA 2061 42.75 MVREKKDRRYNLLALTGSAALLALAINLAISAVNAHTKKRKRRDLAGSNVRVNLSAPEILQLANSIISKSKAVHDAVGSVPLDKATYANVVLPLAELEAQQFPTEEVRKASAEAEQRIDSHVLMCSQREDVYCVVKAFVARGEWISPEANRYVQCLIRDFERNGLNLTSTKREEVQRLRAHIDDLSVLYIKNMSDESTFLLFSETELAGLPPEFLQSLDKAENGKFKVYLRSRHVIPVLELCKIGMTRKTVAVAYGKRGGEANPSVLKSLIQLRHKLARLLSYSNYADYAVAPRMAKSSSKVFEFLEDISASVNELAARELDMLKDLKRKEEGEFPFGNEDLLYYMKRVEEQYLDLDFGVLKQYFPINLVLPGIFKIFQDLFGLRFEEIADVEVWHSDVRAFSVFDLSSSELLGYFYLDIHPREGKYGHICVVALQNGSLSSNGARQIPVALLISQCQKEVDDHPGLLRFSEVVNLFHEFGHVVQHICNRASFARFSGLRVDPDFVEIPARVFENWCYESFSLKLISGFHQDITKPIEDRMCESLKRWRSSFSALKLKQEILYCLFDQIIHSTEDVDMVKLFRDLHPKVMLGLPMLEGTNPASCFPRSAVGFEATCYSRIWSEVFAADMFASKFPGGLLSQYIGMQFRKKVLALGGSKDPIDILSDFLGREPSIQAFVESKVQASL* 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19418611 19452763 - Vvi1g1134 Vvi1g1134 770334

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1134 686 CDD M3A_TOP 60 681 - -
Vvi1g1134 686 Pfam Peptidase family M3 241 680 IPR001567 GO:0004222|GO:0006508
Vvi1g1134 686 PANTHER SACCHAROLYSIN 38 683 - -
Vvi1g1134 686 PANTHER PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED 38 683 IPR045090 GO:0004222|GO:0006508
Vvi1g1134 686 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 54 679 - -
Vvi1g1134 686 Gene3D Neurolysin, domain 3 172 678 IPR024077 -
Vvi1g1134 686 Gene3D Collagenase (Catalytic Domain) 366 516 IPR024079 GO:0008237
Vvi1g1134 686 Coils Coil 314 334 - -
Vvi1g1134 686 Gene3D Endopeptidase. Chain P; domain 1 29 162 IPR024080 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1134 K01392 THOP1; thimet oligopeptidase [EC:3.4.24.15] - vvi:100251085 1324.3
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1134 Blo01g00374 . Bda01g02194 . Bpe13g00518 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0720 . . . . . . . . . . . Bma01g00026 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011877 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30