Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1135 ATGGCGCCCAAGCCCAAGCCAAAGCCCACGGCTTCGTCGTCGTCACAGCCCCCACCTCCCATCGAAGACCTCTTCACGTCTCTCAACCTCCACATCCAGCGGTCCCAATTCGACCAGGCCGTCAAAGTCGCGGATCAGATTCTCTTGGTTGCGCCCTCCGATGAGGACGCGATTCGGTGCAAGGTTGTGGCCTTGATCAAAGAAGATAGAATTAATGACGCGTTATCGACTATTCAAGCTTCGCAGAGGCTTCCGATTGATCTCAGTTTCTTCAAGGCATACTGTTTGTACAGGCAAAACAAGTTAGATGAGTCGTTGGAATCCTTGAAAAGCCAAGAGGGAAGCTCCACAGCCATGTTGTTGGAGTCTCAGATTCTATATCGCTTAGGGAAAATGGATGCTTGTATTGATATTTATCAGAAGCTTCAGAAATCCAAGATCGAGTCGTTAGAGATAAACCTTGTTGCTGGTTTGGTGTCGGCTGGGAGAGGTTCTGATGTACAAGGAACGCTGGATGCCCTCAGAGTTAAAGCTACTAGCAGCTTTGAGTTGGCATACAACACTGCCTGTTCTTTGATAGAAAGGAGTAAGTACAAAGATGCTGAACAACTCTTGCTGTCAGCTCGAAGGGTTGGCCAGGAAACATTAATGGAAGACAATTTAGCTGATGATGAGATAGAGATTGAACTGGCTCCATTAGCTGTCCAGTTGGCATATGTTCAGCAGCTCCTTGGAAACACACCAGAGGCCATGGAAGCCTACACAGGCATTATTAACCGAAATCTGGCAGATGAATCATCACTTGCTGTGGCAGTAAATAACCTTGTTGCATTAAAGGGTCCAAAAGATATTTCTGATAGCCTAAGGAAACTCGATCGGCTAATGGAAAAAGGCAATGGAGCTCAGAGCTTTCAGCTTTCTAATGGACTGGAGTCCAAACTTTCACCAAAACAGAGGGAAACAATATACACTAATCGTGTGCTTCTACTACTACATGCAAATAGGATGGATCAGGCTCGAGAACTTGTTGCTGCACTGCCAGACATGTTTGCAGACAGTGTGATGCCAGTTCTGCTTCAGGCTGCTGTTTTGGTTAGAGAGAACAAGAGTGGAAAAGCTGAAGAAATATTAGGGCAGTTTGCTGAGAAGTTCCCCGATAAGGCCAAGGTGGTTCTCCTTGCAAGGGCACAGATTGCTGCTGTAGCCGGTCACCCTCAAATTGCGGCTGAGTCCCTTAGTAAAATAGCTGACATTCAGCACTTGCCTGCTACAGTTGCCACCATTGTATCCCTTAAAGAGCGTGCTGGGGATATTGATGGTGCAGAAGCTGTTTTTGATTCTGCAATCCAATGGTGGTCAAATGCCATGACAGAAGATAACAAGCTCACTGTTATAATGCAAGAGGCTGCTTCCTTCAAACTCAAGCATGGGCGGGAGAAGGAGGCTGCCCGGCTATATGAAGAGCTTGTTAAAAGCCATGGAAGTGTACAGGCTTTGATTGGGCTGGTAACTACGGCTGCTCGTGTGGATGTTGACAAGGCTGAAGCTTATGAAAAACAGCTAAAACCATTGCCAGGTTTGAAGGGAGTTGATGTGGAGAGCTTGGAGAGGACTTCCGGTGCCAAACACATTCAAAGTGATAGTCGTGTGGGTATCACTGAAGCATATGAAGAAAGTAAGAATAAGGAGAAGGCAAAGAAGAAAAGAAAGAGAAAGCCAAGGTACCCTAAAGGATTTGACCCTGCAAACCCAGGCCCTCCACCAGACCCGGAGCGGTGGCTACCCAAGAGGGAGAGGTCTAGTTACAGGCCCAAGAGAAAGGACAAGAGAGCAGCTCAGGTGAGAGGCTCACAGGGTGCGGTTGTTAGAGAAAAACATGAAGCTGCTGGTTCAGACACTTCTGCCAATACGTCAAATTCAAAATCAGACCAAGCCACCACCTCCAAAGAGCAAAATCTAGGGCCAAAGGTTGACTACTGTATTAGGATGGGTATTACAACAACCTTGTCCTATTTTTTCTATCTTTGTCAATTGTTTTTTTGGCTGGGTTTGGTTCCAGCAAAGGATTTTTCATATTTAATTTTAATATAA 2091 46.15 MAPKPKPKPTASSSSQPPPPIEDLFTSLNLHIQRSQFDQAVKVADQILLVAPSDEDAIRCKVVALIKEDRINDALSTIQASQRLPIDLSFFKAYCLYRQNKLDESLESLKSQEGSSTAMLLESQILYRLGKMDACIDIYQKLQKSKIESLEINLVAGLVSAGRGSDVQGTLDALRVKATSSFELAYNTACSLIERSKYKDAEQLLLSARRVGQETLMEDNLADDEIEIELAPLAVQLAYVQQLLGNTPEAMEAYTGIINRNLADESSLAVAVNNLVALKGPKDISDSLRKLDRLMEKGNGAQSFQLSNGLESKLSPKQRETIYTNRVLLLLHANRMDQARELVAALPDMFADSVMPVLLQAAVLVRENKSGKAEEILGQFAEKFPDKAKVVLLARAQIAAVAGHPQIAAESLSKIADIQHLPATVATIVSLKERAGDIDGAEAVFDSAIQWWSNAMTEDNKLTVIMQEAASFKLKHGREKEAARLYEELVKSHGSVQALIGLVTTAARVDVDKAEAYEKQLKPLPGLKGVDVESLERTSGAKHIQSDSRVGITEAYEESKNKEKAKKKRKRKPRYPKGFDPANPGPPPDPERWLPKRERSSYRPKRKDKRAAQVRGSQGAVVREKHEAAGSDTSANTSNSKSDQATTSKEQNLGPKVDYCIRMGITTTLSYFFYLCQLFFWLGLVPAKDFSYLILI* 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19466226 19475589 + Vvi1g1135 Vvi1g1135 770335

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1135 696 PANTHER SIGNAL RECOGNITION PARTICLE 72 13 648 IPR026270 GO:0006614
Vvi1g1135 696 PIRSF SRP72 11 659 IPR026270 GO:0006614
Vvi1g1135 696 MobiDBLite consensus disorder prediction 1 20 - -
Vvi1g1135 696 SUPERFAMILY TPR-like 234 492 IPR011990 GO:0005515
Vvi1g1135 696 Gene3D Tetratricopeptide repeat domain 313 494 IPR011990 GO:0005515
Vvi1g1135 696 MobiDBLite consensus disorder prediction 1 16 - -
Vvi1g1135 696 SUPERFAMILY TPR-like 21 258 IPR011990 GO:0005515
Vvi1g1135 696 Pfam SRP72 RNA-binding domain 547 604 IPR013699 GO:0006614|GO:0008312|GO:0048500
Vvi1g1135 696 Gene3D Tetratricopeptide repeat domain 20 168 IPR011990 GO:0005515
Vvi1g1135 696 MobiDBLite consensus disorder prediction 536 650 - -
Vvi1g1135 696 Pfam Putative TPR-like repeat 58 156 IPR031545 -
Vvi1g1135 696 MobiDBLite consensus disorder prediction 631 650 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1135 K03108 SRP72; signal recognition particle subunit SRP72 - vvi:100244217 1164.06
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1135 . . . . . Bpe10g00775 . Bma15g00247 Cmo04g01908 . . . . . Sed01g2093 . Cpe01g01594 Bhi07g01862 Tan04g0103 Cmetu10g0385 Lac13g0093 Hepe10g1549 . . Cla05g02631 Cam05g2824 Cec05g2859 Cco05g2892 Clacu05g2827 Cmu05g2675 Cre05g2792 Cone13ag1119 Cone19ag1104 . . Lsi04g00648 . . Cme10g00628 . . . . . . . . . . . Cma04g01810 . Car04g01823 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007046 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 4 2 1 37