Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g114 ATGATGAAAGGCTCTTGGGCAATATGCATCCTGCTACTCTTATCACTACACAAACCCACATTTTCCTCAATCCACCAGAAGCTCTCGGAGTTTCAAAGCAGGCTTCAGAATACAGCACTACCTCCATTTCCATCACTAGATGGGTCGCAGAATGGGAGAGTGTTCTACCCTATTGCATATGGGGCTGATCCAACTGGGGTGAATGAGAGCAGTGATGCAATACTCAGTGCTTTGGCTGATGCTTTCAGTATTCGAAATGGGGTTGAGATGTTGCCTGGAATCACTGATTTGGGTGGTGTGGTCATAGATTTACAAGGTGGAAACTACAAGATCAGCAAACCCATTAGGTTTCCGGCTGGTGGAGGAAATGTTCTGGTGTGCCAAGGGACTCTGCGGGCATCAGACACTTTTCCAGACGATGAGCATCTCATTGAATTATGGTCACCAAATTCTCATAAACTCAACACATCCTCCATCAACCCTGGTGATTTCCCCATCATCAAAGCCCAAAACAACCCGATCTACTATGAAGACATCACTTTCAGAGACATCCTCTTCGATTCCAACAACAGCGGAGGTGGTCTTTTCATGATAGACACCGCCAGAATCCGCATCAACAACTGCTTCTTCCTCCACTTCACCACCCAAGGAATTCTAGTCCAGAAAGGCCACGAGAACTTCATTTCCTCCTCCTTTCTCGGCCAGCATTCAACCGTCGGCGGGGACAGGAGCGAGAGAGACTTCTCTGGCACCGCCATTGATCTTGCTGGCAACGACAATGCAGTCACTGATGTCGCCATCTTCTCAGCTGCCATTGGAGTTTTACTCAGAGGACAGGCCAATATAATCACTGGGGTGCACTGCTATAACAAGGCTACGGGCTTTGGAGGCGTTGGGATACTGGTGAAGGCGGGTGGCTCACTTACTAGAATCAGCAACTGTTACTTGGATTTCAATGCGATAGTGATGGAAGATCCAAGTCAAGTTCATGTCACAAATGGATTCTTCCTTGGAGATGGAAATGTGGTTCTGAAATCAGTCCAAGGCCATGTCCGAGGTCTCAACATTGTTGATAATATGTTCAATGGCAACCCCTCGAACATGAAGGCCATTGTTGAGCTAGATGGTCAGTTCACTGACATTGATCAGGTGGTTGTGGACAGAAACAATGCGATTGGGATGAGCCTGAAATCGACAGTGGCGAGATTGACAATTCCCGGAAATGGGACTCACAGGGTTGCAGATTTCTCCTCCCTGCTGCTGTTCCCAAACCGGATCAATCATTTTCAGTACTCGGTTTACGGTCAAGGGGGGTCTGGGTTTGTAGCTCATTCAGTGACCAATGTGTCCAATAATATGCTGGTTGTGGAGAGCCAGAATCCTATTCAAGGGCTTGTTTCCATTGTTGTTGAGCAGTGA 1419 47.5 MMKGSWAICILLLLSLHKPTFSSIHQKLSEFQSRLQNTALPPFPSLDGSQNGRVFYPIAYGADPTGVNESSDAILSALADAFSIRNGVEMLPGITDLGGVVIDLQGGNYKISKPIRFPAGGGNVLVCQGTLRASDTFPDDEHLIELWSPNSHKLNTSSINPGDFPIIKAQNNPIYYEDITFRDILFDSNNSGGGLFMIDTARIRINNCFFLHFTTQGILVQKGHENFISSSFLGQHSTVGGDRSERDFSGTAIDLAGNDNAVTDVAIFSAAIGVLLRGQANIITGVHCYNKATGFGGVGILVKAGGSLTRISNCYLDFNAIVMEDPSQVHVTNGFFLGDGNVVLKSVQGHVRGLNIVDNMFNGNPSNMKAIVELDGQFTDIDQVVVDRNNAIGMSLKSTVARLTIPGNGTHRVADFSSLLLFPNRINHFQYSVYGQGGSGFVAHSVTNVSNNMLVVESQNPIQGLVSIVVEQ* 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1115321 1118841 + Vvi1g114 Vvi1g114 769314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g114 472 Gene3D - 58 465 IPR012334 -
Vvi1g114 472 PANTHER POLYGALACTURONASE QRT3 23 472 IPR039279 GO:0004650
Vvi1g114 472 SUPERFAMILY Pectin lyase-like 53 450 IPR011050 -
Vvi1g114 472 PANTHER POLYGALACTURONASE QRT3-LIKE PROTEIN 23 472 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g114 - - vvi:100264569 943.34