Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1141 ATGGATTCCTCTCTGGGTCTTATCAATGTGGCATTCTTTTGGCTGCTTTTGACGTGGGTTTTGGTGGGGGTTTTGAGAAAAAGGAGAGATGGTGGTGGTGCAGATTCAGAAAATGAACCAACAATGAGAAAATCTACAGTTTTTACCGTGGTTTCTGTTCTGTCCAATGCAATAATCTGTGTTTCTCACCTGGGTTTTTGTTTGTATGAGTTCTGGAGTCTGGAAACCATCAATCTTGTACATATCTTCTCAGCCATGACTTGGGTTTTAGCAGCCATAATCACAGTATCATGTTTCAGAAACAGTACTACTAGAGAAAACAAAAGGTGGCCTCTAATTCTTACTTCGTGGTGGGTCTTTTCCAGCATTTTGAGTTCGCTTTCTGTTTCAGTCTATCTTGTCACCCGGTTAAAAATCCTAACCCTGCCTGATTTTTGGCCTGATTTCGTACCTCAAGCTACCATTGATGATTTTGCTTCTCTAATTCCTTTGTGGATTCTTCTCTGTTTCAATGTTCTGCCTTTTAATTGTGGTAAGAAACGCAGTGATCTTGAACACCCATTGCTAGAAAGTGAGGGAGGAAATCTCTCTCATGGTGTTGATCCTTACAGCAGTGCTGGAATTTGGAGCAAACTCACATTCTTGTGGCTCAATCCACTCTTCAGAAAGGGCCGAGTTCAAAAAATTCAGTTACACCATATCCCTCCAGTTCCTCAATCTGAGAAGGCTGAAACGGCCTCTTCCTTGTTAGAAGAAACGCTGACGAAACAGAAAACTTCAGTGACAAAAGCTTTGTTCTGTTCTGTATGGAGATCCCTGGCCATAAATGCAGTTTTTGCAGGGGCAAATACAATTGCTTCCTATATGGGTCCCTTCTTAATAACACACTTTGTGAATTTCTTATCCGGAAAGGGTGATGATTCAAGCTACTATTATGGGCTGGTTCTTGCATTGATCTTCTTCATGGCAAAGACTCTGGAATCTCTATCACAAAGACAATGGTACTTGGGTGGGCAGCGGATTGGCATCAGAGTGCGGGCAGCTCTCATGGTACTGGTTTACAAGAAGTCTCTATCGATCAAGTATGCTGGCTCCAATAGTGGGAAAATCATAAATTTAATCAACGTGGATGTGGATAGAATTGGAGACTTCTGCCTTTGTATTCATGGAGTTTGGTTGCTTCCAGTTCAGGTTGGCCTGGCTCTTGTCATCCTTTATAGGAATCTTGGTGCTGCCCCATCCATGACTGCTCTATTTGCCACTGTTTTGGTGATGGTGGGAAACACCCCATTAGCTAAAAGACAAGAAAGGCTCCACTCAAAGATCATGGAAGCAAAAGACTCGAGAATCAAAGCTACTTCAGAGACTCTGAAGAGCATGAGAGTCTTGAAACTGCACTCTTGGGAGGACACCTTTTTGAATAAAATTAAGGAACTTAGAGAAACCGAGAGACATTGGCTAAAGAGGTACCTCTATACATGCTCAGCAGTGGCCTTCCTCTTTTGGACTTCTCCCACCTTAGTTTCAGTTATAACATTTGCTGTCTGCATTAAGCTCGCAACCTATCCTACTTCAGAATCATCTGAAGTCTCCATTGATATTGAGGTAGGAGAATACGCTTGGACATGTGATGAAAATTTGAAGCCAACAATCAAAATTGATCAACGGATGATAATTATGAAAGGTTACAAGGTTGCAGTTTGTGGGTCAGTTGGATCTGGCAAATCAAGCTTACTCTGTAGCATACTTGGCGAGATCCCCAGGATCTCTGGGACAGGAAGTAAGGTATATGGATCAAAAGCTTATGTCCCACAGAGTGCTTGGATTCAAACTGGGACAATCAGGGATAATGTGTTGTTTGGAAAGGAAATTAACAAGGCTTTCTATGAGGATGTCTTGGAAGCATGTGCTTTGGATAGGGACATTCAGCTTTGGTATAATGGAGACTTGAGTGTTGTGGGAGAGCGAGGGATGAACTTGAGTGGAGGGCAAAAGCAGAGGATCCAACTGGCAAGGGCAATCTATAGCAAGCAACATCTCATGCTCTTCTTTTTCACTACTGTCATTTATGTCACCCATCAGCTGGAGTTCTTGGATGCTTCAGACCTTGTGATGAAGGATGGCATAATAGTTCAATCTGGAAAATATGAAGATTTGATTGCAGATCCAAATAGTGAACTTGTTAGACAGATGACTGCCCACAACAAATCTCTAGACCAAGTGAACCCATCCCAAGAGAACTGCTTCACCAATAAACCCCCGCAGAAAAAGAAAATTGACCTCATAGAAGAAAATTCGCATGACCCCATCAGCAATGGCAAGCTTTTAGATGGAATCCATAAGGAAGAAACAGAATCTGGTCGGGTAAAATGGCATGTTTATTCAACCTTTATCACTTCTGCCTATAAAGGAGGTCTGGTTCCAGTTATCCTTTTGTGTCAAGTTCTATTCCAAGGGCTGCAGATGGGCAGTAATTACTGGATTGCTTGGGCAACTGAGGAAGAAGGCAGGGTTAGCAGAGAGCAGTTGATAGGGGTATTTTCTTTGTTGTCTGGGGGAAGCTCCATATTCATATTAGGAAGGGCAGTTCTGTTATCAACTATCGCCATTGAGACTGCACGCCACCTCTTCTCTGAAATGATCAAAGCAGTTTTTCGGGCACCCGTTTCATTCTTTGACTCAACCCCCTCAAGTCAAATCCTCAATAGATCTTCTACAGATCAAAGCACAGTAGACACAGACATTCCATACAGATTGGCTGGATTAGCATTTGCACTTATTCAGCTATTAAGTATCATTGTTCTCATGTCCCAAGTTGCCTGGCAGGTCTTCCTTCTCTTTGTATCCATCCTTGCGATCTCCATATGGTATCAGGCAAGAACTAAATTAGCTAGGATGGTTGGGGTTCGAAAAGCTCCAATCCTCCACCACTTTTCAGAATCTGTCGCTGGGGCAGCAACAATTCGTTGCTTCAGTCAAGACGATCGCTTCTTGAGAAGAAATCTCAGCTTGATTGATGATTATTCTCGTGTTGCCTTCCACAACACTGCCACAATGGAATGGCTCTGCGTTCGGATAAACTTTCTTTTCAACCTTGTTTTCTTTTTGGTGCTTGTCATCCTGGTGAGCTTGCCGAGGTCAGCCATTAGTCCCAGTTTGGCAGGACTGGCAGCTACATATGGTTTGAATCTAAATGTTCTCCAAGCCTGGGTGATATGGAACCTATGCAATGTAGAGAACAAAATGATTTCAGTGGAGAGAATTCTTCAATTCACCAAAATACCAAGTGAAGCTCCATTAGTGATTGAGAATTGTAGGCCAAGCCTTGAATGGCCAAGCAATGGAAGAATAGACCTCGACAACCTCCATGTCCGATATACCCCTACTCTCCCAATGGTTCTCAAAGGTATAACTTGCACCTTCCCAGGAGAAAGGAAAATTGGTGTTGTGGGCAGAACAGGAAGTGGAAAGTCAACATTAATCCAAGCTCTCTTCCGAGTCGTTGAGCCCTCAGAAGGCCAGATACTCATTGATGGGGTAGATATCAGTAAGATGGGTTTGAAGGATTTGAGGTCTCGCTTGAGCATAATTCCTCAAGACCCAACACTGTTTCAAGGAACCATGAGAACTAATTTGGATCCTCTAGGAGAGCATTCAGATCAAGAAATCTGGGAGGTGCTGAACAAGTGTCGTCTTGCAGAGATTATAGGACAGGATAAGGGGCTTCTTAATGCACGAGTTGCAGAAGATGGAGAAAATTGGAGTGTTGGACAAAGGCAGCTTGTTTGCCTGGCTAGAGTTCTACTGCAGAGGAGGAAAATTCTGGTGTTGGATGAGGCTACAGCTTCAGTGGACACGGCAACAGATAATTTGATTCAGAAAACAATAAGAGAAGAAACAAGCAAATGCACAGTCATCACGGTCGCCCATCGCATACCCACTGTCATTGACAATGACCTGGTTCTGGTCCTGGATGAAGGCAAGGTTGTTGAGTATGACTCACCGCCTCAGTTACTCAAGGACAGTTCTTCTGCATTCTCGAAATTGGTGATGGAGTTCCGGAGGAGATCATCCAAGAGTAGTTCGTCATGA 4092 43.3 MDSSLGLINVAFFWLLLTWVLVGVLRKRRDGGGADSENEPTMRKSTVFTVVSVLSNAIICVSHLGFCLYEFWSLETINLVHIFSAMTWVLAAIITVSCFRNSTTRENKRWPLILTSWWVFSSILSSLSVSVYLVTRLKILTLPDFWPDFVPQATIDDFASLIPLWILLCFNVLPFNCGKKRSDLEHPLLESEGGNLSHGVDPYSSAGIWSKLTFLWLNPLFRKGRVQKIQLHHIPPVPQSEKAETASSLLEETLTKQKTSVTKALFCSVWRSLAINAVFAGANTIASYMGPFLITHFVNFLSGKGDDSSYYYGLVLALIFFMAKTLESLSQRQWYLGGQRIGIRVRAALMVLVYKKSLSIKYAGSNSGKIINLINVDVDRIGDFCLCIHGVWLLPVQVGLALVILYRNLGAAPSMTALFATVLVMVGNTPLAKRQERLHSKIMEAKDSRIKATSETLKSMRVLKLHSWEDTFLNKIKELRETERHWLKRYLYTCSAVAFLFWTSPTLVSVITFAVCIKLATYPTSESSEVSIDIEVGEYAWTCDENLKPTIKIDQRMIIMKGYKVAVCGSVGSGKSSLLCSILGEIPRISGTGSKVYGSKAYVPQSAWIQTGTIRDNVLFGKEINKAFYEDVLEACALDRDIQLWYNGDLSVVGERGMNLSGGQKQRIQLARAIYSKQHLMLFFFTTVIYVTHQLEFLDASDLVMKDGIIVQSGKYEDLIADPNSELVRQMTAHNKSLDQVNPSQENCFTNKPPQKKKIDLIEENSHDPISNGKLLDGIHKEETESGRVKWHVYSTFITSAYKGGLVPVILLCQVLFQGLQMGSNYWIAWATEEEGRVSREQLIGVFSLLSGGSSIFILGRAVLLSTIAIETARHLFSEMIKAVFRAPVSFFDSTPSSQILNRSSTDQSTVDTDIPYRLAGLAFALIQLLSIIVLMSQVAWQVFLLFVSILAISIWYQARTKLARMVGVRKAPILHHFSESVAGAATIRCFSQDDRFLRRNLSLIDDYSRVAFHNTATMEWLCVRINFLFNLVFFLVLVILVSLPRSAISPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTKIPSEAPLVIENCRPSLEWPSNGRIDLDNLHVRYTPTLPMVLKGITCTFPGERKIGVVGRTGSGKSTLIQALFRVVEPSEGQILIDGVDISKMGLKDLRSRLSIIPQDPTLFQGTMRTNLDPLGEHSDQEIWEVLNKCRLAEIIGQDKGLLNARVAEDGENWSVGQRQLVCLARVLLQRRKILVLDEATASVDTATDNLIQKTIREETSKCTVITVAHRIPTVIDNDLVLVLDEGKVVEYDSPPQLLKDSSSAFSKLVMEFRRRSSKSSSS* 1364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19526695 19532390 + Vvi1g1141 Vvi1g1141 770341

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1141 1363 SMART AAA_5 1143 1334 IPR003593 -
Vvi1g1141 1363 SMART AAA_5 561 738 IPR003593 -
Vvi1g1141 1363 Gene3D - 1100 1353 IPR027417 -
Vvi1g1141 1363 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 274 520 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi1g1141 1363 SUPERFAMILY ABC transporter transmembrane region 267 520 IPR036640 GO:0005524|GO:0016021
Vvi1g1141 1363 Gene3D - 530 683 IPR027417 -
Vvi1g1141 1363 SUPERFAMILY ABC transporter transmembrane region 807 1099 IPR036640 GO:0005524|GO:0016021
Vvi1g1141 1363 CDD ABC_6TM_ABCC_D1 275 526 IPR044746 GO:0140359
Vvi1g1141 1363 Pfam ABC transporter transmembrane region 275 520 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi1g1141 1363 Pfam ABC transporter transmembrane region 841 1044 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi1g1141 1363 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 809 1080 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi1g1141 1363 PANTHER OS01G0902100 PROTEIN 111 1359 - -
Vvi1g1141 1363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 531 723 IPR027417 -
Vvi1g1141 1363 ProSitePatterns ABC transporters family signature. 660 674 IPR017871 GO:0005524
Vvi1g1141 1363 CDD ABCC_MRP_domain2 1115 1335 - -
Vvi1g1141 1363 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 111 1359 - -
Vvi1g1141 1363 Gene3D ABC transporter type 1, transmembrane domain 777 1098 IPR036640 GO:0005524|GO:0016021
Vvi1g1141 1363 Gene3D ABC transporter type 1, transmembrane domain 248 529 IPR036640 GO:0005524|GO:0016021
Vvi1g1141 1363 Pfam ABC transporter 559 682 IPR003439 GO:0005524
Vvi1g1141 1363 Pfam ABC transporter 1134 1282 IPR003439 GO:0005524
Vvi1g1141 1363 Gene3D - 684 762 IPR027417 -
Vvi1g1141 1363 CDD ABC_6TM_ABCC_D2 807 1092 IPR044726 GO:0140359
Vvi1g1141 1363 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1117 1351 IPR003439 GO:0005524
Vvi1g1141 1363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1109 1343 IPR027417 -
Vvi1g1141 1363 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 534 732 IPR003439 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1141 - - - vvi:100259590 2509.56
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1141 . . . . . . . . Cmo04g01910 Cmo18g00707 . Cma18g00720 . Car18g00666 . Cpe09g00569 Cpe01g01598 Bhi07g01868 . . Lac13g0089 Hepe10g1543 . . Cla05g02633 . Cec05g2863 Cco05g2895 Clacu05g2831 Cmu05g2678 . . . . . Lsi04g00654 . . Cme10g00632 Blo06g00821 Blo11g00984 . . . . . . . . . Cma04g01814 . Car04g01826 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006115 0 1 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 3 2 1 1 2 1 1 1 1 1 2 3 1 38