Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1143 ATGGAAAGTGAAATCCAAACTGTTCCCCCCTTTTCTTCTTTAAATACCACCTTGTTTGCCTCTTCTTCATCATATTCTTCAATATTTCTCTTCACAACTGTTTTGCTTTCTTCAATTGCTATCATGGGCTCTGACAAGAAGATCAAGATTGGAATCAATGGGTTCGGAAGGATTGGACGTTTGGTTGCTAGAGTTGCTCTGCAGAGCAATGATGTGGAACTGGTGGCTGTAAATGATCCATTCATCACTACTGATTACATGACTTACATGTTCAAGTATGACAGTGTTCATGGCCACTGGAAGCATCATGATGTTAAGGTTAAGGATTCCAAGACACTTCTCTTTGGTGAGAAGTCTGTCACAGTTTTTGGTGTCAGGAACCCAGAAGAGATCCCATGGGCTGAGACCGGTGCTGACTATGTTGTGGAATCTACTGGAGTGTTCACTGACAAGGACAAGGCCGCTGCCCACTTGAAGGGTGGTGCAAAGAAGGTAATCATCTCTGCCCCCAGCAAAGATGCTCCCATGTTTGTTATGGGTGTCAATGAGAAGGAATACAAGCCCGATATCGACATTGTTTCCAATGCTAGCTGCACTACCAACTGTCTTGCTCCTCTGGCTAAGGTTATTAATGACAGATTTGGCATTGTTGAGGGTCTTATGACCACTGTTCACGCCATCACTGCCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAAGAGCTGCTTCCTTCAACATCATCCCCAGCAGCACTGGTGCTGCCAAGGCTGTTGGAAAGGTGCTGCCTGCACTGAATGGGAAGTTAACCGGCATGTCTTTCCGAGTTCCTACTGTGGATGTTTCAGTCGTGGACCTTACTGTTAGGCTTGAGAAATCGGCCACCTATGACGAGGTCAAAGCCGCTATCAAGGAGGAGTCTGAAGGCAAACTCAAGGGAATCCTGGGGTACACTGAAGATGATGTGGTGTCCACAGACTTCATTGGTGACAGCAGATCAAGCATCTTTGATGCCAAGGCTGGAATTGCCCTGAATGCCAATTTTTTGAAACTCGTCTCGTGGTATGACAACGAATGGGGTTACAGTTCACGGGTAATCGACTTGATCCGCCACATGGCTTCTGTTTAA 1143 46.54 MESEIQTVPPFSSLNTTLFASSSSYSSIFLFTTVLLSSIAIMGSDKKIKIGINGFGRIGRLVARVALQSNDVELVAVNDPFITTDYMTYMFKYDSVHGHWKHHDVKVKDSKTLLFGEKSVTVFGVRNPEEIPWAETGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVMGVNEKEYKPDIDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKSATYDEVKAAIKEESEGKLKGILGYTEDDVVSTDFIGDSRSSIFDAKAGIALNANFLKLVSWYDNEWGYSSRVIDLIRHMASV* 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19543649 19546789 + Vvi1g1143 Vvi1g1143 770343

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1143 380 Gene3D Dihydrodipicolinate Reductase; domain 2 197 362 - -
Vvi1g1143 380 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 42 380 IPR020831 GO:0016620
Vvi1g1143 380 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 49 372 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Vvi1g1143 380 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 48 151 IPR020828 GO:0051287
Vvi1g1143 380 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 196 203 IPR020830 GO:0016620
Vvi1g1143 380 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 197 360 - -
Vvi1g1143 380 SMART gp_dh_n_7 48 198 IPR020828 GO:0051287
Vvi1g1143 380 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 157 170 IPR020831 GO:0016620
Vvi1g1143 380 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 192 210 IPR020831 GO:0016620
Vvi1g1143 380 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 219 235 IPR020831 GO:0016620
Vvi1g1143 380 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 276 293 IPR020831 GO:0016620
Vvi1g1143 380 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 316 331 IPR020831 GO:0016620
Vvi1g1143 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 47 214 IPR036291 -
Vvi1g1143 380 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 203 360 IPR020829 GO:0016620
Vvi1g1143 380 PIRSF GAPDH 46 380 IPR020831 GO:0016620
Vvi1g1143 380 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 42 380 - -
Vvi1g1143 380 Gene3D - 48 376 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1143 K00134 GAPDH, gapA; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] - vvi:100264789 664.455
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1143 Vvi17g920 ECH
Vvi1g1143 Vvi14g1225 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1143 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001932 1 3 2 4 3 1 2 1 1 3 1 1 3 3 3 4 1 3 2 1 3 3 3 1 1 3 2 2 3 3 67