Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1144 ATGGCACTGGTGTATTTCCCCTTTCGCAGTAAAGCCTATGGGCATTGCTGGCGTGCTTTTTCTTCTTTATGTTCGCCGTCCCCATTTGTGGGAACTGGTATTGGTAATGGAGAAGAGTGTATTCGGTCTCAAATCGATATTATTGTATCTAGAATTCGTGAGGGAAGTAGTGATGATGAGGTTTTTAAGTCTCTTGTGCATGATGAAGCTTGTAATGCTATACCCATGTCTCAAAACCTTGTTGATGTGTTGCTTCATCGATTTAAAGATGATTGGAAGTCTGCATTGGGGTTGTTTAGATGGGCGGAGTCGCGTTTGGGGTATGAACATGCACCTGAAGCATATGATATGATGGTTGATATATTGGGGAAATTGAAGCAAGTGGATAAGATGAGAGCACTGATGGAGGAAATGCGTCAGGGCAATCTTGTTAGGCTTAGTACTAAGAACACAGAATCCATGAACTTATTGCTTGATACCCTTTGTAAAGAGAGGAAAGTTGAGCAGGCCCGTGCAATCTTCTTGGAACTCAAACCACACATTTCCCCCAACACCCACACATTTAACATTTTTATTCATGGTTGGTGTAAAGCCAATCGGGTAGATGAAGCTGAGTGGACAATCCAAGAGATGAAAGGACATGGTTGCCGCCCTTGTGTAATTAGCTACTCAACAATTATTCAATCCTATTGCCGCCAAAGCAATTTCAGAAAGGTGTATGAGCTTCTAGATGATATGCAAGCTCAAGGGTGTGCGCCAAATGTTGTCACTTACACCACTATCATGTGTTCGCTGACAAAGAGGCTGTTCGTGTTTTTGAGAGCAAATAAATGTGAGTGGGGTTATAACCTCTTTGAGGAGATGGTAGGTAAAGCAATAACACCTAGATATAAGACATGTGCTTTGCTTTTGGATGAAATCAAACAGAAGAATATGCATGATGCCGCTGAGAGGATTGAAGTTTTCATGAAGCAAATGAAAACCTCCGAGTAA 993 41.79 MALVYFPFRSKAYGHCWRAFSSLCSPSPFVGTGIGNGEECIRSQIDIIVSRIREGSSDDEVFKSLVHDEACNAIPMSQNLVDVLLHRFKDDWKSALGLFRWAESRLGYEHAPEAYDMMVDILGKLKQVDKMRALMEEMRQGNLVRLSTKNTESMNLLLDTLCKERKVEQARAIFLELKPHISPNTHTFNIFIHGWCKANRVDEAEWTIQEMKGHGCRPCVISYSTIIQSYCRQSNFRKVYELLDDMQAQGCAPNVVTYTTIMCSLTKRLFVFLRANKCEWGYNLFEEMVGKAITPRYKTCALLLDEIKQKNMHDAAERIEVFMKQMKTSE* 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19548425 19557950 + Vvi1g1144 Vvi1g1144 770344

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1144 330 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Vvi1g1144 330 PANTHER OS02G0601600 PROTEIN 148 267 - -
Vvi1g1144 330 PANTHER OS02G0601600 PROTEIN 272 328 - -
Vvi1g1144 330 PANTHER OS02G0601600 PROTEIN 38 148 - -
Vvi1g1144 330 TIGRFAM PPR: pentatricopeptide repeat domain 221 255 IPR002885 -
Vvi1g1144 330 TIGRFAM PPR: pentatricopeptide repeat domain 114 142 IPR002885 -
Vvi1g1144 330 TIGRFAM PPR: pentatricopeptide repeat domain 186 218 IPR002885 -
Vvi1g1144 330 Pfam PPR repeat 114 140 IPR002885 -
Vvi1g1144 330 Pfam PPR repeat 153 178 IPR002885 -
Vvi1g1144 330 Gene3D Tetratricopeptide repeat domain 51 210 IPR011990 GO:0005515
Vvi1g1144 330 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 38 148 - -
Vvi1g1144 330 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 272 328 - -
Vvi1g1144 330 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 148 267 - -
Vvi1g1144 330 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Vvi1g1144 330 Gene3D Tetratricopeptide repeat domain 211 330 IPR011990 GO:0005515
Vvi1g1144 330 Pfam PPR repeat family 218 265 IPR002885 -
Vvi1g1144 330 Pfam PPR repeat 181 211 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1144 - - - vvi:100264769 537.339
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1144 . . . . . Bpe10g00778 . Bma15g00243 . . . . . Car18g00665 Sed06g0134 Cpe09g00570 . Bhi07g01872 Tan04g0097 Cmetu10g0012 Lac13g0085 Hepe10g1542 . . Cla05g02634 Cam05g2827 . Cco05g2896 Clacu05g2832 Cmu05g2679 Cre05g2795 . Cone19ag1108 . . Lsi04g00655 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011749 1 1 0 2 1 0 2 1 1 1 1 1 1 0 1 1 1 3 1 0 1 1 1 1 1 1 1 1 1 1 30