Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1145 ATGCCACCCTCATATTTCCCTCTTCGGTGGGAGAGCACTGGAGACCAGTGGTGGTACGCTTCACCAATTGATTGGGCAGCTGCAAACGGCCACTATGATCTTGTGAGGGAGCTTCTCCACCTCGACACCAACCTCCTCATCAAGCTCACCTCTCTAAGGCGAATTCGCCGCTTGGAAACAGTGTGGGATGATGAAGAACAGTTCGATGATGTTGCCAGATGCCGCTCTCAAGTTGCCCGGAAGTTACTCCGGGAATGCCAGACCAAGAGAGGACACAACTCTCTCATTAGAGCAGGCTATGGTGGATGGCTTCTGTACACTGCTGCCTCAGCGGGGGATGTGGGTTTTGTGAAGGAATTGCTCCAGAGAGACCCTCTGCTTGTGTTTGGAGAAGGAGAATATGGTGTCACTGACATATTTTATGCTGCGGCCAGGAGCAAGAACTCTGAGGTTTTCAGGCTGCTGCTTGATTTTTCAATCTCACCGGGGGCTGTTCATGCTGCAGCTAGAGGGGGAAATTTGGAGATTCTGAAGGAGCTCCTTCATGATTGTACTGATGTTCTGGTTTATAGAGATATGCAGGGGTCTACAATCTTACATACAGCCTCTGGAAGAGGACAGGTTGAGATAGTTAAGGGCCTACTGGAATCCTATGACATTATCAACTCTACAGACAATCAGGGGAACACAGCATTGAATGTGGCTGCTTACAGGGGTTACTTAACTGTGCTAGAGGTTCTAATTCTTGCATCTCCCTCTTCAATCTTTTTGACAAACAATTATGGGGACACTTTACTCCACATGGCAGTGGCTGGTTTTCGAAGCCCGGGTTTCAGGAGACTGGACCGGCAGATTGAGCTCATGAAGCAGTTGCTACGTGGGAAGATTGTGAACATGGAAGACATCATCAATGCCAAGAACAATGATGGAAGAACTGCTCTTCACATGGCTGTAATTGGGAACATTCAGTCAGATGTGGTGGAATTGCTGATGACAGTGCCATCAATTAATTTGAACATCCGGGATGCTGATGGTATGACTCCTCTAGATCTCCTCAAGCAACGCCCACAATCAGCTTCTTCTGAAATCTTAATCAAGGAGTTAATTTCAGCTGGAGGGATATCTCTTTCAGGAGCTTACTCCCAAGCCCTTCAACCAAGAAGAAATTTGCAGTAG 1176 47.62 MPPSYFPLRWESTGDQWWYASPIDWAAANGHYDLVRELLHLDTNLLIKLTSLRRIRRLETVWDDEEQFDDVARCRSQVARKLLRECQTKRGHNSLIRAGYGGWLLYTAASAGDVGFVKELLQRDPLLVFGEGEYGVTDIFYAAARSKNSEVFRLLLDFSISPGAVHAAARGGNLEILKELLHDCTDVLVYRDMQGSTILHTASGRGQVEIVKGLLESYDIINSTDNQGNTALNVAAYRGYLTVLEVLILASPSSIFLTNNYGDTLLHMAVAGFRSPGFRRLDRQIELMKQLLRGKIVNMEDIINAKNNDGRTALHMAVIGNIQSDVVELLMTVPSINLNIRDADGMTPLDLLKQRPQSASSEILIKELISAGGISLSGAYSQALQPRRNLQ* 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19565566 19569566 + Vvi1g1145 Vvi1g1145 770345

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1145 391 SUPERFAMILY Ankyrin repeat 22 365 IPR036770 -
Vvi1g1145 391 ProSiteProfiles Ankyrin repeat region circular profile. 194 216 - -
Vvi1g1145 391 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 1 162 - -
Vvi1g1145 391 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 164 380 - -
Vvi1g1145 391 SMART ANK_2a 194 223 IPR002110 GO:0005515
Vvi1g1145 391 SMART ANK_2a 134 164 IPR002110 GO:0005515
Vvi1g1145 391 SMART ANK_2a 309 340 IPR002110 GO:0005515
Vvi1g1145 391 SMART ANK_2a 261 301 IPR002110 GO:0005515
Vvi1g1145 391 SMART ANK_2a 165 189 IPR002110 GO:0005515
Vvi1g1145 391 SMART ANK_2a 18 47 IPR002110 GO:0005515
Vvi1g1145 391 SMART ANK_2a 100 129 IPR002110 GO:0005515
Vvi1g1145 391 SMART ANK_2a 344 378 IPR002110 GO:0005515
Vvi1g1145 391 SMART ANK_2a 227 257 IPR002110 GO:0005515
Vvi1g1145 391 Gene3D - 13 374 IPR036770 -
Vvi1g1145 391 Pfam Ankyrin repeat 309 342 IPR002110 GO:0005515
Vvi1g1145 391 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE 1 162 - -
Vvi1g1145 391 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE 164 380 - -
Vvi1g1145 391 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Vvi1g1145 391 Pfam Ankyrin repeats (3 copies) 166 250 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1145 - - - vvi:100242500 728.398
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1145 Vvi14g1223 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1145 Blo01g00371 Blo16g01188 Bda01g02190 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0728 . . . . . . . . . . . . Bma06g00580 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009176 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 34