Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1152 ATGGGGACTGAGATGACCCCCATTTCTAGCCAAGAGCCCTCAAGAACAGCTACTCCCATTAGAGCAACTACCCCTGTGGCTAGAAGCCCCATATCTTCTGGCTCGGATGGGGAAGAATCCAATGCTTGCAAGATGCCGGAGAACAAGAATTCAGAACATGCTAGAAAGCCTAATCCTCTGGACACCCGAGCAACGGCCTGGGACGAGGCGGAACGAGCCAAGTATCTTGCAAGGTATAAGCGTGAAGAAGTGAAGATACAAGCCTGGGAAAATCATGAGAAAAGGAAAGCTGAGATGGAAATGAAAAGAATGGAGGTGAAGGCTGATAAATTGAAAGCTTGGGCGCAAGAGAAATTGGCAAACAAAATTGCTGCAACCAGGAGAATAGCTGAAGAGAAGCGTGCAAGTGCCGAAGCCAAACTGAATGAGAAAGCTGCAAGGACTTCTGAAAGGGCAGATTACATAAGGAGGACTGGTCGTTTGCCCTCTTCTTTCTACTTCAATGATTTTTTTTTTTTTTTGTGCCATGTTTCTTTTACAATATCAACTTTTGAATCCACTGCAAGAAGGCACGGGGGTTATCGTGATAATGAATTTAAGGAGCGGGAGTCTGATTTAGATGTGTCAAGGCGGAATTTTGCTTATTCTAAGGACGAGTATGATCGGAGTAGGAACGGTAACCGTGAGGGTCGGATTAGGGATTCGAGAGAGAGGAATAGGGTTAGACAGAAGGATATTAAGGAGAGGGAATCAATAAATGGTGGATACCGGTCTTCTTCTAGTAGAAGTGATTCTGGAAGTAGTGGTGGTGGTGGTGGTGTGCCTAGACGATGTGTTTTTTCGGTTAGGACTGCTGACCGTGAGCCTGGTGAGTTGTCAAGTGAGAGTGGATCGGATGATGGCATCGAGTCGGAGTCGCAGGCTAATAATGAGTTTTCAAAGGTGGAGAATGGGATTCGGTCGCCTTTGGATAGGAAGAGGAAGTTTTCACCTATTGTGTGGGATAGAGAAGATAAAGAATCGAATAATTCTTCCAAAAATGAGGTTACCCTTGATGTGTCTAGTTCTCCCATTGAGTTGAACACTTCTTCACCTCAAGAGCAGCGGTGGAGTAATGAAAAAGAAGCAGACCAAATTGAAGATGAAGATTATGTTCCCACTCGGAACATATCATCATCACGATGGGCAGATGAAGCCAATTCCCCAGTTGATGAGGGTGAAATTTTGGATGATGAGGAAATTCCTAAGAGGAGGAAGAAAATGTTTCTTTCTGAGGGCTTGGAGCCCAGGGTACTCAAGAAATCTGTGAGTCCTGAGCTTGGGGAGCTTAAGAGGGAAGGTTCTGAAGGAGCAAGGGCAAAGTCAACTGACTCTGATGAAAGAGGCAACCGTGGTAGGTCAGATACAGATTCTGAGCATGAAAATGTTTCTCGGGAGACTCCAGAACCTGCACTCCCACCACAAAGAAGTGTAAATATGCTTCAAGGATGTAGAAGTGTTGACGAGTTTGAGAGATTAAATAAGATAGATGAAGGCACTTATGGTGTTGTGTACAGAGCTAAAGATAAGAAGACGGGAGAAATCGTAGCCTTGAAGAAGGTGAAGATGGAGAAAGAAAGAGAAGAAGTCGTGGTAGGGAGCAATCTTGACAGTATATTTATGACATCAAATCTACTTTTGAATAATAGGGGTGAGTTGAAGATTTGTGATTTTGGATTGGCTCGGCAATACGGGAGCCCTTTGAAACCATATACTCATTTGGTGGTTACTCTATGGTACAGGGCGCCAGAACTTTTGTTGGGAGCAAAGCAATACTCAACAGCAATTGACATGTGGTCGTTAGGTTGCATAATGGCTGAACTGTTATCAAAGGAACCACTGTTCAATGGGAAAACTGAACTTGATCAGATTGACAAGATTTTTAGAACCCTTGGCACACCAAGTGAGACAATTTGGCCTGGGTTTTCCAAATTGCCTGGAGTCAAGGTTAACTTCGTCAAGCATCAGTATAACCTACTGCGTAAGAAATTTCCTGCCACATCTTTCACTGGATCTCCGGTTCTCTCTGACTCTGGATTTGACTTGTTGAACAAACTTTTAACTTATGACCCTGAGAAGAGGATTACAGCTGAAGCTGCTCTTAACCATGATTGGTTCCGCGAAGTTCCTCTTCCCAAATCTAAAGATTTCATGCCTACTTTTCCTGCTCAGCATGCCCAGGACAGGCGCGTGCGAAGAATAATGAAGAGTCCAGATCCTTTAGAAGAGCAGCGTAGAAAGGAGTTGCAGCAAGGGGAATTAGGAGCTGGTGGTTTGTTTGGCTAA 2325 44.34 MGTEMTPISSQEPSRTATPIRATTPVARSPISSGSDGEESNACKMPENKNSEHARKPNPLDTRATAWDEAERAKYLARYKREEVKIQAWENHEKRKAEMEMKRMEVKADKLKAWAQEKLANKIAATRRIAEEKRASAEAKLNEKAARTSERADYIRRTGRLPSSFYFNDFFFFLCHVSFTISTFESTARRHGGYRDNEFKERESDLDVSRRNFAYSKDEYDRSRNGNREGRIRDSRERNRVRQKDIKERESINGGYRSSSSRSDSGSSGGGGGVPRRCVFSVRTADREPGELSSESGSDDGIESESQANNEFSKVENGIRSPLDRKRKFSPIVWDREDKESNNSSKNEVTLDVSSSPIELNTSSPQEQRWSNEKEADQIEDEDYVPTRNISSSRWADEANSPVDEGEILDDEEIPKRRKKMFLSEGLEPRVLKKSVSPELGELKREGSEGARAKSTDSDERGNRGRSDTDSEHENVSRETPEPALPPQRSVNMLQGCRSVDEFERLNKIDEGTYGVVYRAKDKKTGEIVALKKVKMEKEREEVVVGSNLDSIFMTSNLLLNNRGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGAKQYSTAIDMWSLGCIMAELLSKEPLFNGKTELDQIDKIFRTLGTPSETIWPGFSKLPGVKVNFVKHQYNLLRKKFPATSFTGSPVLSDSGFDLLNKLLTYDPEKRITAEAALNHDWFREVPLPKSKDFMPTFPAQHAQDRRVRRIMKSPDPLEEQRRKELQQGELGAGGLFG* 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19607085 19617233 - Vvi1g1152 Vvi1g1152 770352

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1152 774 MobiDBLite consensus disorder prediction 218 252 - -
Vvi1g1152 774 MobiDBLite consensus disorder prediction 370 384 - -
Vvi1g1152 774 MobiDBLite consensus disorder prediction 438 479 - -
Vvi1g1152 774 Coils Coil 127 147 - -
Vvi1g1152 774 MobiDBLite consensus disorder prediction 253 268 - -
Vvi1g1152 774 Gene3D Transferase(Phosphotransferase) domain 1 556 719 - -
Vvi1g1152 774 Pfam Remorin, C-terminal region 61 163 IPR005516 -
Vvi1g1152 774 MobiDBLite consensus disorder prediction 318 345 - -
Vvi1g1152 774 PANTHER CELL DIVISION PROTEIN KINASE 362 541 - -
Vvi1g1152 774 PANTHER CELL DIVISION PROTEIN KINASE 555 774 - -
Vvi1g1152 774 MobiDBLite consensus disorder prediction 750 774 - -
Vvi1g1152 774 MobiDBLite consensus disorder prediction 438 490 - -
Vvi1g1152 774 MobiDBLite consensus disorder prediction 42 59 - -
Vvi1g1152 774 MobiDBLite consensus disorder prediction 218 416 - -
Vvi1g1152 774 Gene3D Phosphorylase Kinase; domain 1 488 554 - -
Vvi1g1152 774 SMART serkin_6 503 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1152 774 Pfam Protein kinase domain 556 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1152 774 MobiDBLite consensus disorder prediction 346 369 - -
Vvi1g1152 774 MobiDBLite consensus disorder prediction 1 64 - -
Vvi1g1152 774 ProSiteProfiles Protein kinase domain profile. 379 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1152 774 PANTHER CYCLIN-DEPENDENT KINASE G-2-LIKE 362 541 - -
Vvi1g1152 774 PANTHER CYCLIN-DEPENDENT KINASE G-2-LIKE 555 774 - -
Vvi1g1152 774 MobiDBLite consensus disorder prediction 297 316 - -
Vvi1g1152 774 MobiDBLite consensus disorder prediction 1 39 - -
Vvi1g1152 774 SUPERFAMILY Protein kinase-like (PK-like) 495 725 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1152 K08818 CDC2L; cell division cycle 2-like [EC:2.7.11.22] - vvi:100246062 930.243
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1152 Vvi17g151 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1152 . . Bda01g02188 . . . . . . Cmo18g00702 . Cma18g00715 . Car18g00660 . Cpe09g00576 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00022 . . . . . . . . . . . . . . . . . Cla11g01359 Cam11g1415 Cec11g1444 Cco11g1440 Clacu11g1574 Cmu11g1394 Cre11g1815 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000852 1 16 2 1 1 1 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 1 2 2 3 2 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76487 PF00069 Pkinase 1.40E-36 CL0016 Vvi PK