Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1154 ATGGAGGTTTTAGGGTTTGTCAGGATGTTCAGAACGATGCCGTATCAATACACTCAAAAGAGAGGTTTTTCAGAGGTTTCCAGAAACGGTGTCTTCCCGGTTCTGATCGTCGGCGCCGGACCCGTCGGTCTCGCTCTCTCTATCCTTCTCACCAAACTTGGGGTCAAATGCGCAGTTTTGGAGAAAAGCAAAACTTTTTCTAAACATCCACAGGCGCACTTCATCAACAATCGATCTATGGAGGTGTTCAGAAAATTGGATGGCTTGGCAGATGAGATCCAAAAGTCTCAACCTCCAGTGGATTTGTGGAGGAAGTTCATATACTGCACATCACTCTATGGCTCTGTTCTTGGGTCAGTAGACCATATGCAACCTGAAGATTTTAAGCAAGTTGTCAGCCCCATCTCCGTTGCTCACTTCTCACAGTACAAACTTACCGCATTACTTCTTAAGCAGCTGGAAAATCTCAGTTTCCGTGTCCATAATTGGGAAGGGTGGGAAGGCCTTAATCATGGGCATGTCAGGGAAAAGCAGATATTGATGGGGCATGAGTGTGTATCTATGGATGCCACTGATGACTGGATTAATGTAACTGCATCTTTTCTCAAGGAGGGGAAGTGTATGAAGAGAAATATACAGTGTAGTATCCTTGTTGGTGCAGATGGTGCAGGAAGTACAGTGAGAAAACTTGCAGGAATAACCATGAAAGGTGAAGAAGACTTGCAAAAGCTAGTCAGCATTCATTTTTTGAGCAAGGAGCTTGGACAATACCTACTCAATGAGAGACCTGGGATGCTATTCTTTATTTTCAATACTGAGGCAATAGGGGTTCTGGTTGCTCATGATCTCAAGCAAGGGGAATTTGTATTGCAGACACCATTCTATCCACCTCAGCAAAGCCTTCATGACTTCAGCCCTGAGGTATGTGAGAAGTTAATCTTCAAATTGGTTGGCCAAGAGCTTGTAGACATAGATGTAATCGATATAAAGCCATGGGTGATGCATGCTGAAGTTGCTGAGAAGTTTGTATCCTGTGACAACCGAATACTACTTGCTGGTGATGCTGCTCATCGTTTCCCTCCAGCTGGTGGTTTTGGAATGAATACCGGTATTCAAGATGCTCATAATCTTGCCTGGAAATTAGCTTCTCTTGTGAAGGGTATTGCACCATCTTCAATTCTTCACACTTATGATACAGAACGTAGACCGATTGCCATTTTCAATACTGAGCTTAGTATTCAGAACTTCAGAGCAGCCATGGCAGTGCCTGCTACACTTGGTCTCAATCCAACTGTTGCAAACTCAGTACATCAAGTTATCACCAATGGCATTGGTTCCATTTTACCTTCTGGACTACAGAGGGCAGTTTTGGATGGAATTTTCACTATAGGTCGTGCACAGGTCTCAGAATCTCTTTTGAATGAAAAAAACCCAATTGGATCTTTTAGGCTTGCTAAACTAAGGCGTATATTTGAAGAAGGAAAGAGTCTTCAACTCCAGTTTCCTGCCGAGGATCTTGGTTTCAGGTATCTCAAAGGAGCACTTGTACCTGACAGTGACAGTGCACAGGATGCACTGGAAGCACCTACTGGCCGTCGGAGGGACTATATTCCCACTGGAGCTCCTGGGTCAAGGCTACCCCATATGAATGTGAGATTATTGTCAAATCTAACTAGTGAGGAGATTTGCTCTACCCTGGATCTGGTATCAGGAGATGAAGTAGAGTTCCTTCTCATTATAGCTCCAGTAAAGGAGTCCTACCAGCTAGCTCATGCCGCATTGAAGGTGGCAGAGGAATTTAAAGTTTCTGCCAAGGTCTGTGTAATGTGGCCTAGTAACACTGACACTGGAGATGAAATAAGTAGTGCAGGGGCATTGATGCCTTGGGAGAGCTACGTAGATGTGGTGGAAGTGGAAGTTAAGAGGTCATCGACAGTGAAGTTGTCGTGGTGGGATATGTGTCAGATGACTGACAAAGGAGCCATCCTAGTGAGGCCTGACGAGCATATTGCTTGGCGTGTTAAGACGGGAATTGTTGGGGATCCCATCTTGGAGATGCATCGGGTTTTCTCTGCCATTTTGTGTGTGAAGTCCTCTACAGCACCCCTCCCCCATACGCATATGTGA 2127 44.95 MEVLGFVRMFRTMPYQYTQKRGFSEVSRNGVFPVLIVGAGPVGLALSILLTKLGVKCAVLEKSKTFSKHPQAHFINNRSMEVFRKLDGLADEIQKSQPPVDLWRKFIYCTSLYGSVLGSVDHMQPEDFKQVVSPISVAHFSQYKLTALLLKQLENLSFRVHNWEGWEGLNHGHVREKQILMGHECVSMDATDDWINVTASFLKEGKCMKRNIQCSILVGADGAGSTVRKLAGITMKGEEDLQKLVSIHFLSKELGQYLLNERPGMLFFIFNTEAIGVLVAHDLKQGEFVLQTPFYPPQQSLHDFSPEVCEKLIFKLVGQELVDIDVIDIKPWVMHAEVAEKFVSCDNRILLAGDAAHRFPPAGGFGMNTGIQDAHNLAWKLASLVKGIAPSSILHTYDTERRPIAIFNTELSIQNFRAAMAVPATLGLNPTVANSVHQVITNGIGSILPSGLQRAVLDGIFTIGRAQVSESLLNEKNPIGSFRLAKLRRIFEEGKSLQLQFPAEDLGFRYLKGALVPDSDSAQDALEAPTGRRRDYIPTGAPGSRLPHMNVRLLSNLTSEEICSTLDLVSGDEVEFLLIIAPVKESYQLAHAALKVAEEFKVSAKVCVMWPSNTDTGDEISSAGALMPWESYVDVVEVEVKRSSTVKLSWWDMCQMTDKGAILVRPDEHIAWRVKTGIVGDPILEMHRVFSAILCVKSSTAPLPHTHM* 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19621572 19632678 + Vvi1g1154 Vvi1g1154 770354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1154 708 Gene3D - 100 341 - -
Vvi1g1154 708 PANTHER FAD/NAD(P)-BINDING OXIDOREDUCTASE FAMILY PROTEIN 32 692 - -
Vvi1g1154 708 SUPERFAMILY FAD/NAD(P)-binding domain 32 424 IPR036188 -
Vvi1g1154 708 Pfam FAD binding domain 33 405 IPR002938 GO:0071949
Vvi1g1154 708 Gene3D - 33 405 IPR036188 -
Vvi1g1154 708 Gene3D - 503 696 - -
Vvi1g1154 708 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 33 55 - -
Vvi1g1154 708 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 213 228 - -
Vvi1g1154 708 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 346 361 - -
Vvi1g1154 708 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 361 377 - -
Vvi1g1154 708 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 379 397 - -
Vvi1g1154 708 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 397 413 - -
Vvi1g1154 708 PANTHER TRK SYSTEM POTASSIUM UPTAKE PROTEIN 32 692 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1154 - - - vvi:100251202 1417.52
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1154 . . . . . . . Bma15g00241 . . . . . . . Cpe09g00574 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005022 1 5 1 1 1 2 1 3 2 0 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 1 3 1 41